Ecosyste.ms: Issues

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GitHub / maxibor/sam2lca issues and pull requests

#16 - how to use custome taxondatabase

Issue - State: closed - Opened by guoyuh over 1 year ago - 4 comments

#15 - Add option for greengenes-style lineages

Pull Request - State: closed - Opened by kdm9 over 1 year ago - 2 comments

#14 - Escape case when no reads pass the minimal percent identity threshold

Pull Request - State: closed - Opened by alexhbnr almost 2 years ago - 1 comment

#12 - sam2lca analyze error

Issue - State: closed - Opened by wyc661217 over 2 years ago - 8 comments

#11 - fixing typos

Pull Request - State: closed - Opened by fasnicar over 2 years ago

#10 - sam2lca JOSS review #1

Issue - State: closed - Opened by marouenbg almost 3 years ago - 2 comments

#9 - Version 1.0.0-beta

Pull Request - State: closed - Opened by maxibor almost 3 years ago

#8 - Tutorial review

Pull Request - State: closed - Opened by alexhbnr almost 3 years ago

#7 - Some cosmetic changes to the text

Pull Request - State: closed - Opened by alexhbnr almost 3 years ago - 1 comment

#6 - Replace reference management with using ref ids instead of names

Pull Request - State: closed - Opened by alexhbnr almost 3 years ago - 1 comment

#5 - Move accession_hits_to_taxid to initialisation of class Alignment

Issue - State: closed - Opened by alexhbnr over 3 years ago - 1 comment

#4 - Identify unique combinations of taxids before running NCBI topology

Pull Request - State: closed - Opened by alexhbnr over 3 years ago

#3 - Subset list to references with aligned reads to improve speed

Pull Request - State: closed - Opened by alexhbnr over 3 years ago - 1 comment

#2 - Consider adding of creating otu tables of given taxonomic rank

Issue - State: closed - Opened by jfy133 about 4 years ago - 1 comment