Ecosyste.ms: Issues

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GitHub / maxibor/pydamage issues and pull requests

#28 - Question about output

Issue - State: closed - Opened by amycthorpe 6 months ago - 1 comment

#27 - Pydamage version 0.80

Pull Request - State: closed - Opened by maxibor 6 months ago

#26 - what is file pydamage_filtered_results.csv？

Issue - State: closed - Opened by timeresistance1996 12 months ago - 4 comments

#25 - Add minimum contig length option

Issue - State: closed - Opened by maxibor over 1 year ago - 1 comment

#24 - Surpress writing row numbers to file

Pull Request - State: closed - Opened by alexhbnr over 1 year ago

#23 - Remove pypmml dependancy

Pull Request - State: closed - Opened by maxibor almost 3 years ago

#22 - Question for understanding

Issue - State: closed - Opened by Anto007 about 3 years ago - 6 comments

#21 - Analyzing not so ancient DNA?

Issue - State: closed - Opened by Anto007 about 3 years ago - 1 comment

#20 - Normalize PyDamage output before feeding into GLM model

Issue - State: closed - Opened by maxibor over 3 years ago

#19 - Path 'analyze' does not exist

Issue - State: closed - Opened by Anto007 over 3 years ago - 7 comments

#18 - Allow selection of output folder

Issue - State: closed - Opened by genomewalker over 3 years ago - 1 comment

#17 - Dev

Pull Request - State: closed - Opened by maxibor almost 4 years ago

#16 - Restrict output of damage frequencies to limited number of positions

Issue - State: closed - Opened by alexhbnr about 4 years ago - 1 comment
Labels: enhancement

#15 - Fix picke protocol issues

Pull Request - State: closed - Opened by maxibor about 4 years ago

#14 - CLI update and calmd troubleshooting

Pull Request - State: closed - Opened by maxibor about 4 years ago

#13 - Small helpmessage improvements to help documentation

Pull Request - State: closed - Opened by jfy133 about 4 years ago - 1 comment

#12 - Unit tests

Issue - State: closed - Opened by maxibor about 4 years ago

#11 - Version 0.40

Pull Request - State: closed - Opened by maxibor over 4 years ago

#10 - add example output

Pull Request - State: closed - Opened by maxibor over 4 years ago

#9 - Output csv

Pull Request - State: closed - Opened by maxibor over 4 years ago

#8 - Option(s) to use whole BAM as reference

Issue - State: closed - Opened by jfy133 over 4 years ago - 6 comments
Labels: enhancement

#7 - Could not fit a model

Issue - State: closed - Opened by Lxb-qqyb over 4 years ago - 2 comments
Labels: question

#6 - Reduce the precision of floats in the output table

Issue - State: closed - Opened by alexhbnr over 4 years ago - 1 comment
Labels: enhancement

#5 - Change matplotlib backend to plot with headless server

Pull Request - State: closed - Opened by alexhbnr over 4 years ago - 3 comments

#4 - Add G->A damage

Issue - State: closed - Opened by maxibor almost 5 years ago - 1 comment

#3 - README suggestions

Pull Request - State: closed - Opened by jfy133 almost 5 years ago

#2 - Escapes missing BAM index prior to iterating over aligned reads

Pull Request - State: closed - Opened by alexhbnr almost 5 years ago

#1 - Fix conda create environment from file command

Pull Request - State: closed - Opened by alexhbnr almost 5 years ago