matthiaskoenig/pymetadata issues and pull requests

#52 - omex complains about missing files in archive

Issue - State: open - Opened by fbergmann about 1 month ago - 1 comment
Labels: bug

#51 - Dont write into `Path(file).parent / "resources"`

Issue - State: closed - Opened by Conni2461 4 months ago - 2 comments

#50 - pymetadata.omex.IDENTIFIERS_PREFIX ends in a semicolon rather than a forward slash

Issue - State: closed - Opened by robertvi 6 months ago - 3 comments

#49 - Support compact annotations

Issue - State: closed - Opened by matthiaskoenig 6 months ago - 1 comment

#48 - ERROR Namespace with key 'stato' exists in MIRIAM. Overwrite namespace!

Issue - State: closed - Opened by matthiaskoenig 6 months ago

#47 - Offline modus

Issue - State: open - Opened by matthiaskoenig 6 months ago
Labels: feature

#46 - fix: Drop legacy UUID package

Pull Request - State: closed - Opened by cheriimoya 6 months ago

#45 - fix: Only call mkdir on the cache_path if cache is enabled

Pull Request - State: closed - Opened by cheriimoya 6 months ago

#44 - Update to OLS4

Issue - State: closed - Opened by matthiaskoenig over 1 year ago
Labels: feature

#43 - Ontology Lookup Search features

Pull Request - State: open - Opened by matthiaskoenig about 2 years ago - 1 comment

#42 - Create OLSOntology class

Pull Request - State: closed - Opened by UtkarshChaurasia over 2 years ago

#41 - Ols search

Pull Request - State: closed - Opened by UtkarshChaurasia over 2 years ago

#40 - Evaluate https://bioregistry.io/

Issue - State: open - Opened by matthiaskoenig over 2 years ago - 2 comments
Labels: evaluate

#39 - Evaluate biomappings

Issue - State: open - Opened by matthiaskoenig over 2 years ago
Labels: evaluate

#38 - Changes for version 0.3.0

Pull Request - State: closed - Opened by matthiaskoenig over 2 years ago

#37 - Python 3.11 support

Issue - State: closed - Opened by matthiaskoenig over 2 years ago
Labels: feature

#36 - Changed unichem webservices version 2.0

Issue - State: closed - Opened by matthiaskoenig over 2 years ago
Labels: bug

#35 - Failing resources unichem

Issue - State: closed - Opened by matthiaskoenig over 2 years ago
Labels: bug

#34 - Update dependency information

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#33 - More robust handling of relative paths in omex

Issue - State: closed - Opened by matthiaskoenig over 2 years ago
Labels: omex

#32 - Support YAML format for COMBINE archive

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#31 - Twitter integration

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#30 - Update pymetadata>=0.2.9

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#29 - Changes for v0.2.9

Pull Request - State: closed - Opened by matthiaskoenig over 2 years ago

#28 - Update KISAO and SBO ontologies

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#27 - Refactor test folder

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#26 - Rename master branch to main

Issue - State: closed - Opened by matthiaskoenig over 2 years ago
Labels: bug

#25 - Error in reading iCGB21FR.omex

Issue - State: closed - Opened by matthiaskoenig over 2 years ago
Labels: bug

#24 - Support python 3.10

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#23 - Drop python 3.7 support

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#22 - Write out master flag in manifest.xml

Issue - State: closed - Opened by matthiaskoenig almost 3 years ago
Labels: bug

#21 - Support encrypted COMBINE archives

Issue - State: closed - Opened by matthiaskoenig almost 3 years ago
Labels: feature, wontfix

#20 - `manifest.xml` not written correctly

Issue - State: closed - Opened by matthiaskoenig almost 3 years ago - 1 comment
Labels: bug

#19 - Finish package migration

Issue - State: closed - Opened by matthiaskoenig almost 3 years ago

#18 - Support python 3.10

Issue - State: closed - Opened by matthiaskoenig almost 3 years ago

#17 - Support compression with omex

Issue - State: closed - Opened by matthiaskoenig almost 3 years ago

#16 - COMBINE Archive Version 2 prototype

Issue - State: open - Opened by matthiaskoenig almost 3 years ago
Labels: feature, omex