Ecosyste.ms: Issues

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GitHub / matthiaskoenig/pkdb_analysis issues and pull requests

#58 - Bump addressable from 2.7.0 to 2.8.1 in /src/pkdb_analysis/reports/interactive/template

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#57 - Bump addressable from 2.7.0 to 2.8.0 in /src/pkdb_analysis/reports/interactive/template

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#56 - Changes for pkdb_analysis-v0.2.0

Pull Request - State: closed - Opened by matthiaskoenig over 3 years ago

#55 - Python 3.9 support

Issue - State: closed - Opened by matthiaskoenig over 3 years ago

#54 - Fix mypy issues

Issue - State: open - Opened by matthiaskoenig over 3 years ago
Labels: testing

#53 - Fix flake8 issues

Issue - State: open - Opened by matthiaskoenig over 3 years ago
Labels: testing

#52 - New release

Issue - State: closed - Opened by matthiaskoenig over 3 years ago - 1 comment

#51 - PK calculation with SD/SE and other statistics

Issue - State: open - Opened by matthiaskoenig over 3 years ago
Labels: priority, PK calculation

#50 - More robust PK calculation (no regression with integration noise)

Issue - State: open - Opened by matthiaskoenig almost 4 years ago - 3 comments
Labels: priority, PK calculation

#49 - Include substance information in PKData from PKDB

Issue - State: open - Opened by matthiaskoenig about 4 years ago

#48 - Fix failing tests

Issue - State: closed - Opened by matthiaskoenig about 4 years ago - 1 comment
Labels: testing

#47 - Fix database links in interactive report

Issue - State: closed - Opened by matthiaskoenig about 4 years ago
Labels: bug

#46 - Minor fixes create_table: pubmeds as integers and switch name/sid

Issue - State: closed - Opened by matthiaskoenig about 4 years ago
Labels: bug

#45 - Update dose-dependency plots

Issue - State: closed - Opened by matthiaskoenig about 4 years ago

#44 - Updated circos plots

Issue - State: closed - Opened by matthiaskoenig about 4 years ago

#43 - Create table templates & use to create caffeine tables

Issue - State: closed - Opened by matthiaskoenig about 4 years ago

#42 - Fixes for PKDB tables

Issue - State: closed - Opened by matthiaskoenig about 4 years ago

#41 - Update handling of environment variables

Issue - State: open - Opened by matthiaskoenig about 4 years ago

#40 - Updated pkdb_analysis breaks midazolam analysis scripts

Issue - State: closed - Opened by matthiaskoenig about 4 years ago - 1 comment
Labels: bug, priority

#39 - Speedup and support of multi-dimensional pk calculation

Issue - State: open - Opened by matthiaskoenig about 4 years ago
Labels: PK calculation

#38 - Timecourse table not working

Issue - State: closed - Opened by janekg89 about 4 years ago
Labels: bug

#37 - Refactor altair interactive pharmacokinetic plots

Issue - State: closed - Opened by matthiaskoenig about 4 years ago

#36 - Some tests fail on windows (path issues when import gspread)

Issue - State: closed - Opened by matthiaskoenig about 4 years ago - 1 comment

#35 - Update pkdb_analysis for new serializers (PK-DB)

Issue - State: closed - Opened by matthiaskoenig about 4 years ago
Labels: priority

#34 - Update documentation notebooks (readthedocs)

Issue - State: open - Opened by matthiaskoenig about 4 years ago
Labels: documentation, priority

#33 - CI stuck on MacOS and Windows

Issue - State: open - Opened by matthiaskoenig about 4 years ago
Labels: wontfix

#32 - Update build infrastructure

Issue - State: closed - Opened by matthiaskoenig about 4 years ago

#31 - Fix failing/skipped tests

Issue - State: closed - Opened by matthiaskoenig about 4 years ago
Labels: testing

#30 - Merging outputs_refactoring

Pull Request - State: closed - Opened by matthiaskoenig about 4 years ago

#29 - New release with zenodo link

Issue - State: closed - Opened by matthiaskoenig over 4 years ago

#28 - Update interactive plot reports

Issue - State: open - Opened by matthiaskoenig over 4 years ago
Labels: reports

#27 - Create correct excel table headers (for table report)

Issue - State: open - Opened by matthiaskoenig over 4 years ago
Labels: reports

#26 - PKFilters `add_to_all overwrites` filters

Issue - State: closed - Opened by matthiaskoenig over 4 years ago
Labels: bug, priority

#25 - Filters are not applied on pkdbdata.studies

Issue - State: closed - Opened by matthiaskoenig over 4 years ago
Labels: bug, priority

#23 - Pubmeds are not read for table report

Issue - State: closed - Opened by matthiaskoenig over 4 years ago
Labels: bug, reports

#22 - Update table reports to support excel and spreadsheets

Issue - State: closed - Opened by matthiaskoenig over 4 years ago

#21 - Changes for release v0.1.5

Pull Request - State: closed - Opened by matthiaskoenig over 4 years ago - 1 comment

#20 - Changes for v0.1.4

Pull Request - State: closed - Opened by matthiaskoenig over 4 years ago - 1 comment

#19 - Release pip package

Issue - State: closed - Opened by matthiaskoenig over 4 years ago - 1 comment

#18 - Changes for v0.1.3 release

Pull Request - State: closed - Opened by matthiaskoenig over 4 years ago - 1 comment

#17 - Tests failing after refactoring

Issue - State: closed - Opened by matthiaskoenig over 4 years ago

#16 - Improve building time of docker container (interactive plots)

Issue - State: closed - Opened by matthiaskoenig over 4 years ago - 1 comment
Labels: reports

#15 - test interactive plot

Issue - State: closed - Opened by janekg89 over 4 years ago - 3 comments

#14 - Allow calculation of pharmacokinetics parameters without dose

Issue - State: closed - Opened by matthiaskoenig over 4 years ago
Labels: enhancement

#13 - AUC and Vd calculated as NaN on simulation time courses

Issue - State: closed - Opened by matthiaskoenig over 4 years ago
Labels: bug

#12 - Calculation of thalf_max not very robust

Issue - State: closed - Opened by matthiaskoenig over 4 years ago
Labels: bug

#11 - Delete or merge stale "refactoring" branch

Issue - State: closed - Opened by matthiaskoenig over 4 years ago

#10 - Fix failing unittests

Issue - State: closed - Opened by matthiaskoenig over 4 years ago

#9 - Linear regression problems with numerical simulation in pharmacokinetics

Issue - State: closed - Opened by matthiaskoenig over 4 years ago
Labels: bug

#8 - Linear regression not working with NaN values in pharmacokinetics

Issue - State: closed - Opened by matthiaskoenig over 4 years ago
Labels: bug

#7 - Meta-analysis plots not working on low resolution screens

Issue - State: closed - Opened by matthiaskoenig over 4 years ago - 2 comments

#6 - changes for release v0.1.1

Pull Request - State: closed - Opened by matthiaskoenig over 4 years ago - 1 comment

#5 - Setup continious integration

Issue - State: closed - Opened by matthiaskoenig over 4 years ago - 1 comment

#4 - Write tests for functionality

Issue - State: closed - Opened by matthiaskoenig over 4 years ago

#3 - Pharmacokinetics updated

Pull Request - State: closed - Opened by matthiaskoenig over 4 years ago

#2 - Remove sensitive and large files from repository

Issue - State: closed - Opened by matthiaskoenig over 4 years ago - 2 comments

#1 - Merging changes in master

Pull Request - State: closed - Opened by matthiaskoenig over 4 years ago