Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / matthiaskoenig/brendapy issues and pull requests

#64 - Proposed integration of a new feature

Issue - State: open - Opened by noparis 6 months ago

#63 - Installation with conda ?

Issue - State: open - Opened by noparis 11 months ago - 1 comment
Labels: feature

#62 - Protein sequences when filtering by EC number

Issue - State: open - Opened by AlejandroSanchezCano over 1 year ago

#60 - Switch to BRENDA JSON format

Issue - State: open - Opened by matthiaskoenig almost 2 years ago

#59 - Changes for release v0.5.0

Pull Request - State: closed - Opened by matthiaskoenig over 2 years ago

#58 - Rich logging

Issue - State: closed - Opened by matthiaskoenig over 2 years ago
Labels: priority

#57 - Update resources (OWL, BRENDA, ...)

Issue - State: closed - Opened by matthiaskoenig over 2 years ago - 1 comment

#56 - Updated OWL parsing

Issue - State: closed - Opened by matthiaskoenig over 2 years ago
Labels: priority

#55 - Replace format with fstrings

Issue - State: closed - Opened by matthiaskoenig over 2 years ago
Labels: priority

#54 - Replace os.path usage with pathlib

Issue - State: closed - Opened by matthiaskoenig over 2 years ago
Labels: priority

#53 - Fix failing tests

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#52 - Update dependencies

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#51 - Refactor README.rst

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#50 - Create github secrets for github, pypi and twitter

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#49 - Add logo

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#48 - Fix remaining mypy issues

Issue - State: open - Opened by matthiaskoenig over 2 years ago

#47 - flake8 tests

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#46 - Reformat code base with black

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#45 - Code coverage reports

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#44 - Github actions integration

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#42 - Zenodo json update

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#41 - Rename master to main branch

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#40 - Refactor test folder

Issue - State: closed - Opened by matthiaskoenig over 2 years ago

#39 - Resources host is down

Issue - State: closed - Opened by lyinch about 3 years ago - 5 comments
Labels: bug, priority

#38 - Better handling of -999 values and ranges

Issue - State: open - Opened by matthiaskoenig over 4 years ago - 8 comments

#37 - Problem with ujson when installing via PIP

Issue - State: closed - Opened by bilehtin over 4 years ago - 1 comment

#36 - Chebi identifiers of chemical species

Issue - State: open - Opened by DeepaMahm about 5 years ago - 2 comments
Labels: feature

#35 - Issue with the common names displayed while parsing taxonomy information

Issue - State: open - Opened by DeepaMahm about 5 years ago
Labels: bug

#34 - Download online resources (v0.4.1)

Pull Request - State: closed - Opened by matthiaskoenig about 5 years ago - 1 comment

#33 - Changes for v0.4.0

Pull Request - State: closed - Opened by matthiaskoenig about 5 years ago - 1 comment

#32 - Make new pypi release

Issue - State: closed - Opened by matthiaskoenig about 5 years ago - 3 comments

#31 - Resolve Km entries to actual reference

Issue - State: open - Opened by matthiaskoenig about 5 years ago - 5 comments
Labels: wontfix, BRENDA

#30 - redundant information filter

Issue - State: closed - Opened by Karrenbelt about 5 years ago - 4 comments
Labels: BRENDA

#29 - encoding

Issue - State: closed - Opened by Karrenbelt about 5 years ago - 1 comment

#28 - Resolve uniprot/swissprot information when provided

Issue - State: closed - Opened by matthiaskoenig about 5 years ago - 1 comment

#27 - Map to additional substance ontologies

Issue - State: closed - Opened by matthiaskoenig about 5 years ago - 1 comment

#26 - Create SBML file with information

Issue - State: closed - Opened by matthiaskoenig about 5 years ago

#25 - brenda_download.txt - file not downloaded during installation

Issue - State: closed - Opened by DeepaMahm about 5 years ago - 4 comments
Labels: duplicate

#24 - Organisms with single token not parsed correctly

Issue - State: closed - Opened by matthiaskoenig about 5 years ago - 1 comment
Labels: bug

#23 - Changes for brendapy-v0.3.0

Pull Request - State: closed - Opened by matthiaskoenig about 5 years ago

#22 - Fix #21, updated access to all information on proteins

Pull Request - State: closed - Opened by matthiaskoenig about 5 years ago - 1 comment

#21 - Updated field access for simple information browsing

Issue - State: closed - Opened by matthiaskoenig about 5 years ago

#20 - bugfixes and updates

Pull Request - State: closed - Opened by matthiaskoenig about 5 years ago - 1 comment

#19 - Parse comments

Issue - State: closed - Opened by matthiaskoenig about 5 years ago
Labels: feature

#18 - Parse tissue information

Issue - State: closed - Opened by matthiaskoenig about 5 years ago
Labels: feature, BRENDA

#17 - Complete mapping of substance names

Issue - State: open - Opened by matthiaskoenig about 5 years ago - 8 comments
Labels: BRENDA

#16 - Species not parsed correctly for some proteins

Issue - State: closed - Opened by matthiaskoenig about 5 years ago

#15 - Move away from git lfs (due to bandwidth limitations)

Issue - State: closed - Opened by matthiaskoenig about 5 years ago - 1 comment

#14 - Taxonomy support for BRENDA to filter entries

Pull Request - State: closed - Opened by matthiaskoenig about 5 years ago - 2 comments

#13 - Incorrect references for source tissue

Issue - State: closed - Opened by DeepaMahm about 5 years ago

#12 - Substrates associated with Km values

Issue - State: closed - Opened by DeepaMahm about 5 years ago

#11 - Issue with reference provided for km values

Issue - State: closed - Opened by DeepaMahm about 5 years ago - 3 comments

#10 - Add taxonomic information

Issue - State: closed - Opened by matthiaskoenig about 5 years ago

#9 - Add units to KM, SA, KI, TN

Issue - State: closed - Opened by DeepaMahm about 5 years ago

#8 - Filter all -999 values

Issue - State: closed - Opened by DeepaMahm about 5 years ago - 1 comment

#7 - changes for v0.2.0

Pull Request - State: closed - Opened by matthiaskoenig about 5 years ago

#6 - Feature parser update

Pull Request - State: closed - Opened by matthiaskoenig about 5 years ago - 1 comment

#5 - Issues with BRENDA flat file format

Issue - State: open - Opened by matthiaskoenig about 5 years ago - 1 comment
Labels: BRENDA

#4 - Refactor parser by parsing all proteins from entry at once

Issue - State: closed - Opened by matthiaskoenig about 5 years ago

#3 - Activate travis tests for package

Issue - State: closed - Opened by matthiaskoenig about 5 years ago

#2 - version bump

Pull Request - State: closed - Opened by matthiaskoenig about 5 years ago

#1 - brendapy-v0.1.1 - BRENDA in python

Pull Request - State: closed - Opened by matthiaskoenig about 5 years ago