Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / martinsos/opal issues and pull requests

#32 - Refactor SIMD code and add support for SSE2 and NEON

Pull Request - State: open - Opened by althonos about 2 years ago - 1 comment

#31 - Add E-value

Issue - State: open - Opened by Martinsos over 8 years ago

#30 - no member named 'abs' in namespace 'std';

Issue - State: open - Opened by FadelBerakdar over 8 years ago - 1 comment

#29 - Add SHW mode

Issue - State: open - Opened by Martinsos about 9 years ago

#28 - When gap open is smaller then gap extend, stuff breaks

Issue - State: open - Opened by Martinsos about 9 years ago
Labels: bug

#27 - Add flag for turning off overflow check

Issue - State: open - Opened by Martinsos over 9 years ago
Labels: enhancement

#26 - report GCUPS for opal_aligner ?

Issue - State: closed - Opened by jeffdaily over 9 years ago - 3 comments

#25 - Alignment of data for SSE/AVX does not seem to matter

Issue - State: open - Opened by Martinsos over 9 years ago
Labels: medium priority

#24 - deleted

Issue - State: closed - Opened by Martinsos over 9 years ago

#23 - Improve speed of basic search

Issue - State: open - Opened by Martinsos over 9 years ago - 4 comments
Labels: enhancement, high priority, killer feature

#21 - Create example of usage

Issue - State: open - Opened by Martinsos almost 10 years ago
Labels: enhancement, low priority

#20 - Update README!

Issue - State: open - Opened by Martinsos almost 10 years ago
Labels: bug, high priority

#19 - Split swimd.cpp into more files

Issue - State: open - Opened by Martinsos almost 10 years ago
Labels: enhancement, low priority

#18 - Limit memory usage of alignment

Issue - State: open - Opened by Martinsos almost 10 years ago
Labels: enhancement, high priority

#17 - Improve alignment speed

Issue - State: open - Opened by Martinsos almost 10 years ago - 3 comments
Labels: enhancement, high priority

#16 - Consider using swimd to solve 1:1 for large targets

Issue - State: open - Opened by Martinsos almost 10 years ago
Labels: enhancement, low priority, killer feature

#15 - Make function input more flexible

Issue - State: closed - Opened by Martinsos almost 10 years ago - 1 comment
Labels: enhancement, medium priority

#14 - Add flag to choose if end location is needed (to make search faster)

Issue - State: closed - Opened by Martinsos almost 10 years ago - 1 comment
Labels: enhancement, low priority

#13 - Implement finding location in target and query where best score was found

Issue - State: closed - Opened by Martinsos almost 10 years ago - 1 comment
Labels: enhancement, high priority

#12 - Difference between swimd and edlib

Issue - State: closed - Opened by rob-p about 10 years ago - 2 comments

#11 - Slowdown after new feature

Issue - State: closed - Opened by Martinsos over 10 years ago - 2 comments
Labels: bug, high priority

#10 - scores are often incorrect

Issue - State: closed - Opened by tolot27 over 10 years ago - 11 comments
Labels: bug, medium priority

#9 - calculate hits for all query sequences of a multiple fasta file

Issue - State: open - Opened by tolot27 over 10 years ago - 1 comment
Labels: enhancement, low priority

#8 - fixed all warnings; set -Wall; changed alphabet to unsigned char*

Pull Request - State: closed - Opened by tolot27 over 10 years ago - 1 comment

#7 - made parameters as compatible as possible with NCBI Blast; fixes #6

Pull Request - State: open - Opened by tolot27 over 10 years ago - 2 comments

#6 - make command line parameters compatible to blast/swipe

Issue - State: open - Opened by tolot27 over 10 years ago - 2 comments
Labels: bug, enhancement, medium priority

#5 - Add callback function that is called after sequence is calculated

Issue - State: open - Opened by Martinsos over 10 years ago
Labels: enhancement, low priority

#4 - Write better tests

Issue - State: open - Opened by Martinsos over 10 years ago
Labels: medium priority

#3 - Process multiple cells in one iteration, add padding to database sequences, optimize for cache

Issue - State: open - Opened by Martinsos over 10 years ago - 3 comments
Labels: enhancement, low priority

#2 - Implement AVX2 version

Issue - State: closed - Opened by Martinsos over 10 years ago - 1 comment

#1 - Implement calculation of alignment

Issue - State: closed - Opened by Martinsos over 10 years ago - 6 comments
Labels: enhancement, high priority, killer feature