marrink-lab/bentopy issues and pull requests

#30 - Add combination compartments

Pull Request - State: open - Opened by ma3ke 24 days ago - 1 comment

#29 - The big rewrite

Pull Request - State: closed - Opened by ma3ke 7 months ago - 1 comment

#29 - The big rewrite

Pull Request - State: closed - Opened by ma3ke 7 months ago - 1 comment

#28 - Voxelization problem

Issue - State: open - Opened by jan-stevens 8 months ago - 2 comments

#28 - Voxelization problem

Issue - State: open - Opened by jan-stevens 8 months ago - 2 comments

#27 - Implement an implied default compartment when compartment definitions are omitted

Pull Request - State: closed - Opened by ma3ke 8 months ago - 1 comment

#27 - Implement an implied default compartment when compartment definitions are omitted

Pull Request - State: closed - Opened by ma3ke 8 months ago - 1 comment

#26 - Behaviour when no compartments are defined

Issue - State: open - Opened by jan-stevens 8 months ago - 5 comments
Labels: enhancement

#26 - Behaviour when no compartments are defined

Issue - State: open - Opened by jan-stevens 8 months ago - 5 comments
Labels: enhancement

#25 - Add check subcommand

Pull Request - State: closed - Opened by ma3ke 9 months ago - 1 comment

#25 - Add check subcommand

Pull Request - State: closed - Opened by ma3ke 9 months ago - 1 comment

#24 - Add a `keep` option for setting the segment center

Issue - State: open - Opened by ma3ke 9 months ago

#24 - Add a `keep` option for setting the segment center

Issue - State: open - Opened by ma3ke 9 months ago

#23 - Add a constraints mechanism and configuration options

Pull Request - State: closed - Opened by ma3ke 9 months ago - 1 comment
Labels: enhancement

#23 - Add a constraints mechanism and configuration options

Pull Request - State: closed - Opened by ma3ke 9 months ago - 1 comment
Labels: enhancement

#22 - Unexpected behaviour at high density

Issue - State: open - Opened by jan-stevens 9 months ago - 3 comments
Labels: bug

#22 - Unexpected behaviour at high density

Issue - State: open - Opened by jan-stevens 9 months ago - 3 comments
Labels: bug

#21 - Add grocat subcommand

Pull Request - State: closed - Opened by ma3ke 9 months ago - 4 comments

#21 - Add grocat subcommand

Pull Request - State: closed - Opened by ma3ke 9 months ago - 4 comments

#20 - Add mask subcommand

Pull Request - State: closed - Opened by ma3ke 10 months ago - 5 comments

#20 - Add mask subcommand

Pull Request - State: closed - Opened by ma3ke 10 months ago - 5 comments

#19 - Pack according to domains

Pull Request - State: closed - Opened by ma3ke 10 months ago - 2 comments

#19 - Pack according to domains

Pull Request - State: closed - Opened by ma3ke 10 months ago - 2 comments

#18 - Remove padding scheme and rely on valid mode for convolution

Pull Request - State: closed - Opened by ma3ke 10 months ago - 2 comments

#18 - Remove padding scheme and rely on valid mode for convolution

Pull Request - State: closed - Opened by ma3ke 10 months ago - 2 comments

#17 - Periodic boundary conditions

Issue - State: open - Opened by ma3ke 10 months ago

#17 - Periodic boundary conditions

Issue - State: open - Opened by ma3ke 10 months ago

#16 - Remove early padding mechanism

Issue - State: closed - Opened by ma3ke 11 months ago

#16 - Remove early padding mechanism

Issue - State: closed - Opened by ma3ke 11 months ago

#15 - Rearrange heuristic

Issue - State: open - Opened by ma3ke 11 months ago

#15 - Rearrange heuristic

Issue - State: open - Opened by ma3ke 11 months ago

#14 - Improve the rotation heuristic

Issue - State: open - Opened by ma3ke 11 months ago
Labels: enhancement

#14 - Improve the rotation heuristic

Issue - State: open - Opened by ma3ke 11 months ago
Labels: enhancement

#13 - Add support for defining compartments in input files

Pull Request - State: closed - Opened by ma3ke 11 months ago

#13 - Add support for defining compartments in input files

Pull Request - State: closed - Opened by ma3ke 11 months ago

#12 - Pre-placement inspection of the packing

Issue - State: open - Opened by ma3ke 11 months ago

#12 - Pre-placement inspection of the packing

Issue - State: open - Opened by ma3ke 11 months ago

#11 - Solvate?

Issue - State: open - Opened by ma3ke 11 months ago
Labels: enhancement, idea

#10 - Create a pure-Python fallback for render

Issue - State: open - Opened by ma3ke 11 months ago
Labels: enhancement

#9 - Add relevant topol_includes to the README example

Issue - State: open - Opened by ma3ke 11 months ago - 3 comments
Labels: documentation, enhancement, help wanted

#8 - Introduce Python bindings for render-placements

Issue - State: closed - Opened by ma3ke 11 months ago

#7 - Input of compartments

Issue - State: closed - Opened by ma3ke 11 months ago - 1 comment

#6 - Documentation

Issue - State: open - Opened by ma3ke 11 months ago
Labels: documentation

#5 - Integrate render-placements as a subcommand

Issue - State: closed - Opened by ma3ke 11 months ago
Labels: enhancement

#4 - Introduce subcommands to the cli

Issue - State: closed - Opened by ma3ke 11 months ago
Labels: enhancement

#3 - Integration example test and tutorial

Issue - State: open - Opened by ma3ke 11 months ago - 1 comment
Labels: documentation

#2 - Conservative voxelization strategy

Issue - State: closed - Opened by ma3ke 11 months ago

#1 - Place segments over partitions of the background to limit memory footprint

Issue - State: open - Opened by ma3ke 11 months ago - 2 comments
Labels: enhancement

GitHub / marrink-lab/bentopy issues and pull requests