markrobinsonuzh/damefinder issues and pull requests

#44 - snp-mode needed updates

Issue - State: open - Opened by sorjuela about 2 years ago

#43 - detection of ASM regions from one sample

Issue - State: closed - Opened by weishwu about 2 years ago - 7 comments
Labels: enhancement

#42 - Cannot read the VCF file

Issue - State: closed - Opened by hcph about 2 years ago - 5 comments

#41 - Statistic associated with tuple ASM score

Issue - State: closed - Opened by amvondras almost 3 years ago - 1 comment

#40 - Could I use DAMEfinder to identify the possible ICR from a single WGBS dataset?

Issue - State: closed - Opened by yuzhang0327 over 3 years ago - 6 comments

#39 - fix MDSplot based on limma commit

Pull Request - State: closed - Opened by sorjuela over 3 years ago

#38 - Cleanup branch

Pull Request - State: closed - Opened by sorjuela about 4 years ago

#37 - Having problem in loading full genome in reference_file

Issue - State: closed - Opened by kashiff007 about 4 years ago - 8 comments

#36 - Reading reference file error in SNP-based mode

Issue - State: closed - Opened by kashiff007 about 4 years ago - 4 comments

#35 - Cleanup branch

Pull Request - State: closed - Opened by sorjuela about 4 years ago

#34 - Allow non-canonical and non-human genomes

Issue - State: closed - Opened by franrodalg about 4 years ago - 4 comments

#33 - remove vcfR dependency, add VariantAnnotation

Pull Request - State: closed - Opened by sorjuela over 4 years ago

#32 - fix chrom readin in split_bams, some roxygen changes

Pull Request - State: closed - Opened by sorjuela over 4 years ago

#31 - Cleanup branch

Pull Request - State: closed - Opened by sorjuela over 4 years ago

#30 - Cleanup branch

Pull Request - State: closed - Opened by sorjuela over 4 years ago

#29 - Cleanup branch

Pull Request - State: closed - Opened by sorjuela almost 5 years ago

#28 - Cleanup branch

Pull Request - State: closed - Opened by sorjuela almost 5 years ago

#27 - Cleanup branch

Pull Request - State: closed - Opened by sorjuela almost 5 years ago

#26 - Cleanup branch

Pull Request - State: closed - Opened by sorjuela almost 5 years ago

#25 - preprint link

Pull Request - State: closed - Opened by sorjuela almost 5 years ago

#24 - I'd like to use bwa-meth instead of bismark BAM files, is it possible?

Issue - State: closed - Opened by katwre almost 5 years ago - 7 comments

#23 - Cleanup branch

Pull Request - State: closed - Opened by sorjuela about 5 years ago

#22 - remove marg.meth for meth, turn median into mean, bump version

Pull Request - State: closed - Opened by sorjuela about 5 years ago

#21 - Cleanup branch

Pull Request - State: closed - Opened by sorjuela about 5 years ago

#20 - Biology feedback is welcome!

Issue - State: closed - Opened by sorjuela about 5 years ago
Labels: help wanted, question

#19 - Cleanup branch

Pull Request - State: closed - Opened by sorjuela about 5 years ago

#18 - should I submit to bioconductor?

Issue - State: closed - Opened by sorjuela about 5 years ago
Labels: question

#17 - Cleanup branch

Pull Request - State: closed - Opened by sorjuela about 5 years ago

#16 - Cleanup branch

Pull Request - State: closed - Opened by sorjuela about 5 years ago

#15 - Cleanup branch

Pull Request - State: closed - Opened by sorjuela about 5 years ago