Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / marcus1487/nanoraw issues and pull requests
#60 - Why my data didn't have this attribute?
Issue -
State: closed - Opened by omegahh over 5 years ago
- 1 comment
#59 - problem with genome_resquiggle
Issue -
State: closed - Opened by lfaino over 5 years ago
#58 - problem with installation
Issue -
State: closed - Opened by lfaino over 5 years ago
- 1 comment
#57 - corrected group is empty
Issue -
State: closed - Opened by smm19900210 almost 6 years ago
#56 - basecall-group or Analyses group does not exist.
Issue -
State: closed - Opened by smm19900210 almost 6 years ago
#55 - Running nanoraw
Issue -
State: closed - Opened by ahmirza about 6 years ago
- 1 comment
#54 - nanoraw superseded by Tombo
Issue -
State: closed - Opened by tillbaar about 6 years ago
#53 - The meanings of "--statistics-filename"
Issue -
State: closed - Opened by liuqianhn over 6 years ago
- 4 comments
#52 - Resquiggle fails with `Events appear to start before the raw signal` for direct RNA seq
Issue -
State: closed - Opened by lpryszcz over 6 years ago
- 2 comments
#51 - Alignment not produced error and a potential bug
Issue -
State: closed - Opened by haotianteng over 6 years ago
- 2 comments
#50 - Nanoraw ignores moves longer than one
Issue -
State: closed - Opened by rasto2211 over 6 years ago
- 8 comments
#49 - genome_resquiggle problem
Issue -
State: closed - Opened by yasukoh over 6 years ago
- 1 comment
#48 - mapping raw or normalized signal without called events
Issue -
State: closed - Opened by al2na over 6 years ago
- 1 comment
#47 - Issue with extracting out the sequence with genome_resquiggle with direct RNA sequencing
Issue -
State: closed - Opened by awjga over 6 years ago
- 2 comments
#46 - Suggest minimap2 as option
Issue -
State: closed - Opened by timp0 almost 7 years ago
- 2 comments
#45 - Problem with mapping when using genome_resquiggle
Issue -
State: closed - Opened by awjga almost 7 years ago
#44 - explanation of genome_alignment, read_alignment, read_segments and Events
Issue -
State: closed - Opened by liuqianhn almost 7 years ago
- 3 comments
#43 - Nanoraw index
Issue -
State: open - Opened by marcus1487 almost 7 years ago
Labels: enhancement
#42 - test data
Issue -
State: open - Opened by osilander almost 7 years ago
- 2 comments
#41 - fast5s not found within subfolders
Issue -
State: closed - Opened by scottgigante about 7 years ago
- 5 comments
#40 - Add heterozygosity test
Issue -
State: open - Opened by marcus1487 about 7 years ago
- 1 comment
Labels: enhancement
#39 - Start_time not present in fast5
Issue -
State: closed - Opened by usamec about 7 years ago
- 4 comments
#38 - Nanoraw error
Issue -
State: closed - Opened by Subhi about 7 years ago
- 5 comments
#37 - plot error
Issue -
State: closed - Opened by athulmenon about 7 years ago
- 2 comments
#36 - no data in corrected-group
Issue -
State: closed - Opened by sathishkumarRamaswamy about 7 years ago
- 3 comments
#35 - Execution failure
Issue -
State: closed - Opened by cjwoodruff50 over 7 years ago
- 8 comments
#34 - Motif plotting subcommands strand issues
Issue -
State: open - Opened by marcus1487 over 7 years ago
#33 - plot_max_coverage question
Issue -
State: closed - Opened by MikeHala over 7 years ago
- 4 comments
#32 - R7.3
Issue -
State: open - Opened by JohnUrban over 7 years ago
- 3 comments
#31 - Add support for other mappers (BWA-MEM; last)
Issue -
State: closed - Opened by marcus1487 over 7 years ago
- 1 comment
Labels: enhancement
#30 - New function to produce suite of wiggle files
Issue -
State: closed - Opened by marcus1487 over 7 years ago
Labels: enhancement
#29 - compress nanoraw fast5 data
Issue -
State: closed - Opened by marcus1487 over 7 years ago
#28 - Extracting fasta/fastq from corrected reads?
Issue -
State: closed - Opened by danarte over 7 years ago
- 1 comment
#27 - k-mer signal for up- and down-stream number of bases
Issue -
State: closed - Opened by marcus1487 over 7 years ago
#26 - Clarification about some plots
Issue -
State: closed - Opened by danarte over 7 years ago
- 1 comment
#25 - Batch graphmap calls
Issue -
State: closed - Opened by marcus1487 over 7 years ago
Labels: enhancement
#24 - use move slot instead of checking actual matching model_states
Issue -
State: closed - Opened by marcus1487 over 7 years ago
Labels: bug
#23 - Support multiple normalizations
Issue -
State: closed - Opened by marcus1487 over 7 years ago
- 1 comment
Labels: duplicate, enhancement
#22 - Allow different normalization methods
Issue -
State: closed - Opened by marcus1487 over 7 years ago
Labels: enhancement
#21 - plot corrections for several reads anchroed by genomic position
Issue -
State: closed - Opened by marcus1487 over 7 years ago
Labels: enhancement
#20 - Better subcommands
Issue -
State: closed - Opened by marcus1487 over 7 years ago
Labels: enhancement
#19 - fix filename parameter in correct_raw_data method
Pull Request -
State: closed - Opened by mdcao over 7 years ago
- 1 comment
#18 - correctly handle ambiguous indels
Issue -
State: closed - Opened by marcus1487 over 7 years ago
- 1 comment
Labels: bug
#17 - Off by one plotting coordinates
Issue -
State: closed - Opened by marcus1487 over 7 years ago
Labels: bug
#16 - Should add an option to correct and investigate complement (in sequencing) reads
Issue -
State: closed - Opened by marcus1487 over 7 years ago
- 1 comment
Labels: enhancement
#15 - Added stranded option for write_wiggle function
Issue -
State: closed - Opened by marcus1487 over 7 years ago
Labels: enhancement
#14 - plotting to display corrections
Issue -
State: closed - Opened by marcus1487 over 7 years ago
- 1 comment
#13 - Create kmer model from run
Issue -
State: open - Opened by marcus1487 over 7 years ago
Labels: enhancement
#12 - Missing license
Issue -
State: closed - Opened by druvus over 7 years ago
- 2 comments
#11 - Downsample overplot option
Issue -
State: closed - Opened by marcus1487 over 7 years ago
Labels: enhancement
#10 - Blacklist regions
Issue -
State: open - Opened by marcus1487 almost 8 years ago
Labels: enhancement
#9 - Create raw signal reference
Issue -
State: open - Opened by marcus1487 almost 8 years ago
Labels: enhancement
#8 - Add boxplot option for overplotting
Issue -
State: closed - Opened by marcus1487 almost 8 years ago
- 1 comment
#7 - Add wiggle output from coverage plotting script
Issue -
State: closed - Opened by marcus1487 almost 8 years ago
#6 - Allow selection of some files via a pattern
Issue -
State: closed - Opened by marcus1487 almost 8 years ago
#5 - Turn into actual python package
Issue -
State: closed - Opened by marcus1487 almost 8 years ago
#4 - Add new plotting region selection options
Issue -
State: closed - Opened by marcus1487 almost 8 years ago
- 2 comments
#3 - complete kmer plotting
Issue -
State: closed - Opened by marcus1487 almost 8 years ago
- 1 comment
#2 - plot_signal overplotting
Issue -
State: closed - Opened by marcus1487 almost 8 years ago
- 1 comment
#1 - Optimize correction script
Issue -
State: closed - Opened by marcus1487 almost 8 years ago
- 1 comment