Ecosyste.ms: Issues

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GitHub / mani2012/PathoStat issues and pull requests

#48 - Shini not working

Issue - State: open - Opened by DrMaestre about 3 years ago - 1 comment

#47 - fix heatmap

Pull Request - State: closed - Opened by jasonzhao0307 over 5 years ago

#46 - fix readPathoScope examples in taxonomy

Pull Request - State: closed - Opened by jasonzhao0307 over 5 years ago

#45 - modify how to get tid from id

Pull Request - State: closed - Opened by jasonzhao0307 over 5 years ago

#44 - update into new bioC release

Pull Request - State: closed - Opened by jasonzhao0307 over 5 years ago

#43 - Update for new bioconductor release

Pull Request - State: closed - Opened by jasonzhao0307 over 5 years ago

#42 - Added the option for .rds file when uploading PathoStat object file

Pull Request - State: closed - Opened by anfederico about 6 years ago

#41 - Fix bray distance bug caused by vegan update

Pull Request - State: closed - Opened by jasonzhao0307 about 6 years ago

#40 - fix few bugs

Pull Request - State: closed - Opened by jasonzhao0307 about 6 years ago

#39 - Fix Error and Warnings

Pull Request - State: closed - Opened by jasonzhao0307 over 6 years ago

#38 - Update pathostat

Pull Request - State: closed - Opened by jasonzhao0307 over 6 years ago

#37 - Add data upload and filtering tab

Pull Request - State: closed - Opened by jasonzhao0307 over 6 years ago

#36 - Modify PCA and differential analysis

Pull Request - State: closed - Opened by jasonzhao0307 over 6 years ago

#35 - Modify dimension reduction and diversity tab

Pull Request - State: closed - Opened by jasonzhao0307 over 6 years ago

#34 - Modify PCA/PCoA

Pull Request - State: closed - Opened by jasonzhao0307 over 6 years ago - 1 comment

#33 - Add RA plot sorting function and colorbar to heatmap

Pull Request - State: closed - Opened by jasonzhao0307 over 6 years ago

#32 - files updated after running devtools::document()

Pull Request - State: closed - Opened by mlbendall almost 8 years ago - 1 comment

#31 - included examples, fixed NOTE

Pull Request - State: closed - Opened by mlbendall almost 8 years ago

#30 - CoreOTUs

Pull Request - State: closed - Opened by mlbendall almost 8 years ago

#29 - Taxonomy table data structure

Issue - State: open - Opened by mlbendall almost 8 years ago - 1 comment

#28 - Improve formatting of taxonomy table

Issue - State: open - Opened by mlbendall almost 8 years ago

#27 - Alluvial plot implemented

Pull Request - State: closed - Opened by Sanrrone almost 8 years ago

#26 - Git ignore packrat libraries and files

Pull Request - State: closed - Opened by mlbendall almost 8 years ago

#25 - sync alluvial plot

Pull Request - State: closed - Opened by Sanrrone almost 8 years ago - 4 comments

#24 - alluvial plot implemented

Pull Request - State: closed - Opened by Sanrrone almost 8 years ago - 2 comments

#23 - Revert "alluvial plot hard code"

Pull Request - State: closed - Opened by mani2012 almost 8 years ago

#22 - Full covariate selection for Diff Exp tab

Pull Request - State: closed - Opened by tfaits almost 8 years ago - 1 comment

#21 - alluvial plot hard code

Pull Request - State: closed - Opened by Sanrrone almost 8 years ago - 8 comments

#20 - Enables covariate selection

Pull Request - State: closed - Opened by tfaits almost 8 years ago

#19 - Creates covariate dropdown menu

Pull Request - State: closed - Opened by tfaits almost 8 years ago

#18 - OTU filtering

Issue - State: open - Opened by mlbendall almost 8 years ago - 5 comments

#17 - Remove dependency on "microbiome"

Issue - State: closed - Opened by mlbendall almost 8 years ago - 5 comments

#16 - Implement core microbiome heatmap

Issue - State: closed - Opened by mlbendall almost 8 years ago

#15 - Implement core microbiome 2D plot

Issue - State: closed - Opened by mlbendall almost 8 years ago

#14 - Load reports

Pull Request - State: closed - Opened by mlbendall almost 8 years ago - 5 comments

#13 - Load phyloseq object into shiny server (temporary)

Issue - State: closed - Opened by mlbendall almost 8 years ago - 2 comments

#12 - Check that cached taxonomy matches with loaded reports

Issue - State: closed - Opened by mlbendall almost 8 years ago - 1 comment

#11 - Modularize code

Issue - State: open - Opened by mlbendall almost 8 years ago - 4 comments

#10 - Allows differential exp plot to pick covariates

Pull Request - State: closed - Opened by tfaits almost 8 years ago - 1 comment

#9 - force differential exp boxplot to use phyloseq

Pull Request - State: closed - Opened by tfaits almost 8 years ago

#8 - Create color scheme that can be used across modules

Issue - State: open - Opened by mlbendall almost 8 years ago

#7 - Distinguish between discrete and continuous variables

Issue - State: open - Opened by tfaits almost 8 years ago - 1 comment

#6 - Coerce input data into phyloseq-class objects

Issue - State: open - Opened by tfaits almost 8 years ago

#5 - Accommodate phyloseq-class objects throughout

Issue - State: closed - Opened by tfaits almost 8 years ago - 1 comment

#4 - Implement temporal analysis and visualization tab

Issue - State: open - Opened by ecastron almost 8 years ago - 1 comment
Labels: feature

#3 - Enabled caching of taxonomy data

Pull Request - State: closed - Opened by mlbendall about 8 years ago - 6 comments

#2 - Relative abundance and count tables uses datatables

Pull Request - State: closed - Opened by mlbendall about 8 years ago

#1 - BatchQC dependency

Issue - State: closed - Opened by mlbendall about 8 years ago - 1 comment