Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / mamarjan/gff3-pltools issues and pull requests
#75 - More refactoring wanted!
Issue -
State: open - Opened by lomereiter over 11 years ago
- 1 comment
#74 - gff3-filter throws exception when field can't be converted to int or float
Issue -
State: closed - Opened by mamarjan almost 12 years ago
- 2 comments
#73 - empty operand in filtering expression
Issue -
State: open - Opened by mamarjan almost 12 years ago
#72 - README's
Pull Request -
State: closed - Opened by pjotrp about 12 years ago
#71 - gff3-ffetch segfaults
Issue -
State: closed - Opened by pjotrp about 12 years ago
- 2 comments
#70 - Make rake build the tools by default
Issue -
State: open - Opened by pjotrp about 12 years ago
- 2 comments
#69 - Include the tools in Galaxy
Issue -
State: open - Opened by mamarjan about 12 years ago
- 1 comment
#68 - Support for adding a header before the data when selecting columns
Issue -
State: open - Opened by mamarjan about 12 years ago
#67 - Output in CSV instead of tab delimited columns
Issue -
State: open - Opened by mamarjan about 12 years ago
#66 - refactor Record.append_to
Issue -
State: open - Opened by lomereiter about 12 years ago
- 5 comments
#65 - AttributeValue constructors
Issue -
State: open - Opened by lomereiter about 12 years ago
- 1 comment
#64 - GFF3 to GTF and vice versa
Issue -
State: open - Opened by mamarjan about 12 years ago
- 1 comment
#63 - Output only selected fields in a table format
Issue -
State: closed - Opened by mamarjan about 12 years ago
- 2 comments
#62 - Improve README and docs
Issue -
State: open - Opened by mamarjan about 12 years ago
- 1 comment
#61 - A tool for sorting GFF3 files
Issue -
State: open - Opened by mamarjan about 12 years ago
#60 - A tool for correctly grouping all records into features
Issue -
State: closed - Opened by mamarjan about 12 years ago
Labels: in progress
#59 - Improve validation speed
Issue -
State: closed - Opened by mamarjan about 12 years ago
- 2 comments
#58 - Add support for "and" and "or" in filtering on the command line
Issue -
State: closed - Opened by mamarjan about 12 years ago
- 1 comment
#57 - Filtering features
Issue -
State: open - Opened by mamarjan about 12 years ago
#56 - Tool for grouping features and output them in JSON format
Issue -
State: closed - Opened by mamarjan about 12 years ago
#55 - JSON output
Issue -
State: closed - Opened by mamarjan about 12 years ago
- 2 comments
Labels: in progress
#54 - Length of transcripts for filtering
Issue -
State: closed - Opened by mamarjan about 12 years ago
- 1 comment
#53 - Numerical comparison for filtering
Issue -
State: closed - Opened by mamarjan about 12 years ago
- 1 comment
#52 - GTF support
Issue -
State: closed - Opened by mamarjan about 12 years ago
- 2 comments
#51 - GFF3 to JSON tool
Issue -
State: closed - Opened by mamarjan about 12 years ago
- 1 comment
Labels: in progress
#50 - Records to represent pragmas and comments
Issue -
State: closed - Opened by mamarjan about 12 years ago
- 1 comment
#49 - A new repository for the Ruby gem
Issue -
State: closed - Opened by mamarjan about 12 years ago
- 1 comment
Labels: in progress
#48 - Add toString and recursiveToString for Feature
Issue -
State: closed - Opened by mamarjan about 12 years ago
#47 - A tool for sorting GFF3 files
Issue -
State: open - Opened by mamarjan about 12 years ago
#46 - gff3-ffetch to pass FASTA data to output
Issue -
State: closed - Opened by mamarjan about 12 years ago
- 1 comment
#45 - Windows binaries
Issue -
State: open - Opened by mamarjan about 12 years ago
#44 - GDC support
Issue -
State: closed - Opened by mamarjan about 12 years ago
- 1 comment
Labels: in progress
#43 - MAN pages for utilities
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 1 comment
Labels: in progress
#42 - A gem for rubygems.org
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 2 comments
Labels: invalid
#41 - Try re-implementing the FeatureCache using built-in associative arrays
Issue -
State: open - Opened by mamarjan over 12 years ago
Labels: experiment
#40 - Docs
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 1 comment
Labels: in progress
#39 - Ruby interface for validation of GFF3 files
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 1 comment
#38 - Ruby interface for filtering GFF3 files
Issue -
State: closed - Opened by mamarjan over 12 years ago
#37 - & and , have special meaning in attributes field
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 2 comments
#36 - Packaging for Ubuntu 32 and 64 bit
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 4 comments
#35 - New name
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 1 comment
#34 - Basic GFF3 output in D
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 2 comments
#33 - count-features utility too slow
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 1 comment
#32 - Too many files starting with gff3
Issue -
State: closed - Opened by mamarjan over 12 years ago
Labels: in progress
#31 - Benchmark tool seg-fault
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 12 comments
Labels: later
#30 - replace_url_escaped_chars() too slow
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 11 comments
#29 - A utility for benchmarking the parser
Issue -
State: closed - Opened by mamarjan over 12 years ago
#28 - Mostly comments
Pull Request -
State: closed - Opened by pjotrp over 12 years ago
#27 - Move validation out into its own module
Issue -
State: closed - Opened by pjotrp over 12 years ago
- 1 comment
#26 - Validation of record formatting should be lazy
Issue -
State: closed - Opened by pjotrp over 12 years ago
#25 - Refactor RecordRange
Issue -
State: closed - Opened by pjotrp over 12 years ago
- 1 comment
#24 - Move fasta stuff in gff3.d
Issue -
State: closed - Opened by pjotrp over 12 years ago
- 1 comment
Labels: question asked
#23 - Lazysplitlines should be singular
Issue -
State: closed - Opened by pjotrp over 12 years ago
- 3 comments
#22 - Record should move into gff3-record.d module
Issue -
State: closed - Opened by pjotrp over 12 years ago
#21 - Split util.d
Issue -
State: closed - Opened by pjotrp over 12 years ago
- 2 comments
#20 - Expand and maintain README file
Issue -
State: closed - Opened by pjotrp over 12 years ago
- 1 comment
#19 - New labels for github issues
Issue -
State: closed - Opened by pjotrp over 12 years ago
#18 - Parallel parsing of GFF3 records
Issue -
State: open - Opened by mamarjan over 12 years ago
Labels: later
#17 - Validator utility for records
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 1 comment
#16 - Add tests for invalid input and data validation
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 1 comment
#15 - Allow FASTA to be extracted without parsing the rest of the GFF3 file
Issue -
State: closed - Opened by mamarjan over 12 years ago
#14 - HPC in naming dirs/files'
Issue -
State: closed - Opened by pjotrp over 12 years ago
- 3 comments
#13 - Fasta reader comparison
Issue -
State: open - Opened by pjotrp over 12 years ago
- 2 comments
Labels: later
#12 - parseAttributes variable naming
Issue -
State: closed - Opened by pjotrp over 12 years ago
#11 - parseAttributes requires a range of tests
Issue -
State: closed - Opened by pjotrp over 12 years ago
- 5 comments
#10 - openFiles is a module 'global'
Issue -
State: closed - Opened by pjotrp over 12 years ago
#9 - Decouple API from internal GFF3 record data structures
Issue -
State: closed - Opened by pjotrp over 12 years ago
- 1 comment
Labels: later
#8 - Split feature iterate-over-records, and make it record based rather than file based
Issue -
State: closed - Opened by pjotrp over 12 years ago
- 3 comments
Labels: later
#7 - Move test data out of features
Issue -
State: closed - Opened by pjotrp over 12 years ago
- 1 comment
#6 - Support for FASTA data at the end of the file
Issue -
State: open - Opened by mamarjan over 12 years ago
- 1 comment
Labels: later
#5 - Parsing pragmas
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 1 comment
Labels: duplicate
#4 - Ignore comments
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 2 comments
#3 - Correct behavior for %00 in fields
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 3 comments
Labels: later
#2 - Complete support for Latin-1 and Unicode files
Issue -
State: open - Opened by mamarjan over 12 years ago
- 1 comment
Labels: later
#1 - GFF3 parser should parse the lines into Records
Issue -
State: closed - Opened by mamarjan over 12 years ago
- 1 comment
Labels: later