Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mamarjan/gff3-pltools issues and pull requests

#75 - More refactoring wanted!

Issue - State: open - Opened by lomereiter over 11 years ago - 1 comment

#74 - gff3-filter throws exception when field can't be converted to int or float

Issue - State: closed - Opened by mamarjan almost 12 years ago - 2 comments

#73 - empty operand in filtering expression

Issue - State: open - Opened by mamarjan almost 12 years ago

#72 - README's

Pull Request - State: closed - Opened by pjotrp about 12 years ago

#71 - gff3-ffetch segfaults

Issue - State: closed - Opened by pjotrp about 12 years ago - 2 comments

#70 - Make rake build the tools by default

Issue - State: open - Opened by pjotrp about 12 years ago - 2 comments

#69 - Include the tools in Galaxy

Issue - State: open - Opened by mamarjan about 12 years ago - 1 comment

#67 - Output in CSV instead of tab delimited columns

Issue - State: open - Opened by mamarjan about 12 years ago

#66 - refactor Record.append_to

Issue - State: open - Opened by lomereiter about 12 years ago - 5 comments

#65 - AttributeValue constructors

Issue - State: open - Opened by lomereiter about 12 years ago - 1 comment

#64 - GFF3 to GTF and vice versa

Issue - State: open - Opened by mamarjan about 12 years ago - 1 comment

#63 - Output only selected fields in a table format

Issue - State: closed - Opened by mamarjan about 12 years ago - 2 comments

#62 - Improve README and docs

Issue - State: open - Opened by mamarjan about 12 years ago - 1 comment

#61 - A tool for sorting GFF3 files

Issue - State: open - Opened by mamarjan about 12 years ago

#60 - A tool for correctly grouping all records into features

Issue - State: closed - Opened by mamarjan about 12 years ago
Labels: in progress

#59 - Improve validation speed

Issue - State: closed - Opened by mamarjan about 12 years ago - 2 comments

#58 - Add support for "and" and "or" in filtering on the command line

Issue - State: closed - Opened by mamarjan about 12 years ago - 1 comment

#57 - Filtering features

Issue - State: open - Opened by mamarjan about 12 years ago

#56 - Tool for grouping features and output them in JSON format

Issue - State: closed - Opened by mamarjan about 12 years ago

#55 - JSON output

Issue - State: closed - Opened by mamarjan about 12 years ago - 2 comments
Labels: in progress

#54 - Length of transcripts for filtering

Issue - State: closed - Opened by mamarjan about 12 years ago - 1 comment

#53 - Numerical comparison for filtering

Issue - State: closed - Opened by mamarjan about 12 years ago - 1 comment

#52 - GTF support

Issue - State: closed - Opened by mamarjan about 12 years ago - 2 comments

#51 - GFF3 to JSON tool

Issue - State: closed - Opened by mamarjan about 12 years ago - 1 comment
Labels: in progress

#50 - Records to represent pragmas and comments

Issue - State: closed - Opened by mamarjan about 12 years ago - 1 comment

#49 - A new repository for the Ruby gem

Issue - State: closed - Opened by mamarjan about 12 years ago - 1 comment
Labels: in progress

#48 - Add toString and recursiveToString for Feature

Issue - State: closed - Opened by mamarjan about 12 years ago

#47 - A tool for sorting GFF3 files

Issue - State: open - Opened by mamarjan about 12 years ago

#46 - gff3-ffetch to pass FASTA data to output

Issue - State: closed - Opened by mamarjan about 12 years ago - 1 comment

#45 - Windows binaries

Issue - State: open - Opened by mamarjan about 12 years ago

#44 - GDC support

Issue - State: closed - Opened by mamarjan about 12 years ago - 1 comment
Labels: in progress

#43 - MAN pages for utilities

Issue - State: closed - Opened by mamarjan over 12 years ago - 1 comment
Labels: in progress

#42 - A gem for rubygems.org

Issue - State: closed - Opened by mamarjan over 12 years ago - 2 comments
Labels: invalid

#41 - Try re-implementing the FeatureCache using built-in associative arrays

Issue - State: open - Opened by mamarjan over 12 years ago
Labels: experiment

#40 - Docs

Issue - State: closed - Opened by mamarjan over 12 years ago - 1 comment
Labels: in progress

#39 - Ruby interface for validation of GFF3 files

Issue - State: closed - Opened by mamarjan over 12 years ago - 1 comment

#38 - Ruby interface for filtering GFF3 files

Issue - State: closed - Opened by mamarjan over 12 years ago

#37 - & and , have special meaning in attributes field

Issue - State: closed - Opened by mamarjan over 12 years ago - 2 comments

#36 - Packaging for Ubuntu 32 and 64 bit

Issue - State: closed - Opened by mamarjan over 12 years ago - 4 comments

#35 - New name

Issue - State: closed - Opened by mamarjan over 12 years ago - 1 comment

#34 - Basic GFF3 output in D

Issue - State: closed - Opened by mamarjan over 12 years ago - 2 comments

#33 - count-features utility too slow

Issue - State: closed - Opened by mamarjan over 12 years ago - 1 comment

#32 - Too many files starting with gff3

Issue - State: closed - Opened by mamarjan over 12 years ago
Labels: in progress

#31 - Benchmark tool seg-fault

Issue - State: closed - Opened by mamarjan over 12 years ago - 12 comments
Labels: later

#30 - replace_url_escaped_chars() too slow

Issue - State: closed - Opened by mamarjan over 12 years ago - 11 comments

#29 - A utility for benchmarking the parser

Issue - State: closed - Opened by mamarjan over 12 years ago

#28 - Mostly comments

Pull Request - State: closed - Opened by pjotrp over 12 years ago

#27 - Move validation out into its own module

Issue - State: closed - Opened by pjotrp over 12 years ago - 1 comment

#26 - Validation of record formatting should be lazy

Issue - State: closed - Opened by pjotrp over 12 years ago

#25 - Refactor RecordRange

Issue - State: closed - Opened by pjotrp over 12 years ago - 1 comment

#24 - Move fasta stuff in gff3.d

Issue - State: closed - Opened by pjotrp over 12 years ago - 1 comment
Labels: question asked

#23 - Lazysplitlines should be singular

Issue - State: closed - Opened by pjotrp over 12 years ago - 3 comments

#22 - Record should move into gff3-record.d module

Issue - State: closed - Opened by pjotrp over 12 years ago

#21 - Split util.d

Issue - State: closed - Opened by pjotrp over 12 years ago - 2 comments

#20 - Expand and maintain README file

Issue - State: closed - Opened by pjotrp over 12 years ago - 1 comment

#19 - New labels for github issues

Issue - State: closed - Opened by pjotrp over 12 years ago

#18 - Parallel parsing of GFF3 records

Issue - State: open - Opened by mamarjan over 12 years ago
Labels: later

#17 - Validator utility for records

Issue - State: closed - Opened by mamarjan over 12 years ago - 1 comment

#16 - Add tests for invalid input and data validation

Issue - State: closed - Opened by mamarjan over 12 years ago - 1 comment

#14 - HPC in naming dirs/files'

Issue - State: closed - Opened by pjotrp over 12 years ago - 3 comments

#13 - Fasta reader comparison

Issue - State: open - Opened by pjotrp over 12 years ago - 2 comments
Labels: later

#12 - parseAttributes variable naming

Issue - State: closed - Opened by pjotrp over 12 years ago

#11 - parseAttributes requires a range of tests

Issue - State: closed - Opened by pjotrp over 12 years ago - 5 comments

#10 - openFiles is a module 'global'

Issue - State: closed - Opened by pjotrp over 12 years ago

#9 - Decouple API from internal GFF3 record data structures

Issue - State: closed - Opened by pjotrp over 12 years ago - 1 comment
Labels: later

#8 - Split feature iterate-over-records, and make it record based rather than file based

Issue - State: closed - Opened by pjotrp over 12 years ago - 3 comments
Labels: later

#7 - Move test data out of features

Issue - State: closed - Opened by pjotrp over 12 years ago - 1 comment

#6 - Support for FASTA data at the end of the file

Issue - State: open - Opened by mamarjan over 12 years ago - 1 comment
Labels: later

#5 - Parsing pragmas

Issue - State: closed - Opened by mamarjan over 12 years ago - 1 comment
Labels: duplicate

#4 - Ignore comments

Issue - State: closed - Opened by mamarjan over 12 years ago - 2 comments

#3 - Correct behavior for %00 in fields

Issue - State: closed - Opened by mamarjan over 12 years ago - 3 comments
Labels: later

#2 - Complete support for Latin-1 and Unicode files

Issue - State: open - Opened by mamarjan over 12 years ago - 1 comment
Labels: later

#1 - GFF3 parser should parse the lines into Records

Issue - State: closed - Opened by mamarjan over 12 years ago - 1 comment
Labels: later