magnusdv/pedtools issues and pull requests

#53 - How can I change the font size of labels on pedigree plots?

Issue - State: closed - Opened by sdhutchins about 1 month ago - 4 comments

#52 - Problem with differing data types of ID-vecors in `ped()`

Issue - State: closed - Opened by deepchocolate 5 months ago - 1 comment

#51 - `transferMarkers()` does not work as expected if `from` is a list

Issue - State: closed - Opened by bragef 7 months ago - 2 comments

#50 - Inaccurate error message in `addSon()`/`addDaughter()`

Issue - State: closed - Opened by chrcarrizosa 7 months ago - 1 comment

#49 - `setAfreq()` should update mutation models

Issue - State: closed - Opened by magnusdv about 1 year ago

#48 - Adding children across components

Issue - State: closed - Opened by magnusdv about 1 year ago

#47 - Rewrite `plot.list()`; expand to any list of pure ped objects

Pull Request - State: closed - Opened by magnusdv about 1 year ago

#46 - componentwise `nMarkers()`

Issue - State: closed - Opened by magnusdv about 1 year ago

#45 - `randomPed()` error

Issue - State: closed - Opened by magnusdv over 1 year ago - 1 comment
Labels: bug

#44 - Definition of generations

Issue - State: closed - Opened by zachariae over 1 year ago - 2 comments

#43 - `print.ped()` should return the pedigree (not the data frame) invisibly

Issue - State: closed - Opened by magnusdv over 1 year ago

#42 - `randomPed()` error

Issue - State: closed - Opened by chrcarrizosa over 1 year ago - 1 comment

#41 - Plot one marker

Issue - State: closed - Opened by thoree over 1 year ago - 2 comments

#40 - `swapSex()` messes up X-chromosomal markers

Issue - State: closed - Opened by magnusdv over 1 year ago
Labels: bug

#39 - fill argument for `plot.ped()`

Issue - State: closed - Opened by chrcarrizosa over 1 year ago - 1 comment

#38 - Refactor plot function

Pull Request - State: closed - Opened by magnusdv almost 2 years ago

#37 - New errors breaking (marriage) loops

Issue - State: closed - Opened by zachariae over 2 years ago - 4 comments

#36 - consolidate function - feature request

Issue - State: open - Opened by thoree over 2 years ago
Labels: feature

#35 - `distributeMarkers` and `dist` argument

Issue - State: closed - Opened by thoree over 2 years ago - 1 comment

#34 - distributeMarkers and NA

Issue - State: closed - Opened by thoree over 2 years ago - 1 comment

#32 - `addMarker()` ped list fail

Issue - State: closed - Opened by magnusdv over 2 years ago
Labels: bug

#31 - Disconnected random pedigrees

Issue - State: closed - Opened by magnusdv over 2 years ago

#30 - Malformed random pedigrees with selfing

Issue - State: closed - Opened by magnusdv over 2 years ago - 2 comments
Labels: bug

#29 - `readPed()` fails when ID labels have spaces

Issue - State: closed - Opened by magnusdv about 3 years ago

#28 - Check for duplicated allele names?

Issue - State: closed - Opened by thoree about 4 years ago - 1 comment

#27 - Markers with same names allowed

Issue - State: closed - Opened by thoree about 4 years ago - 1 comment

#26 - Feature requests for `transferMarkers`

Issue - State: closed - Opened by thoree about 4 years ago - 1 comment

#25 - Failed to install 'pedtools' from GitHub

Issue - State: closed - Opened by thoree over 4 years ago - 2 comments

#24 - implementation of missing parents

Issue - State: closed - Opened by larahurban over 4 years ago - 5 comments

#23 - Release pedtools 0.9.0

Issue - State: closed - Opened by magnusdv about 5 years ago

#22 - Problem installing with `build_vignettes = TRUE`

Issue - State: closed - Opened by thoree about 5 years ago - 2 comments

#21 - `setFrequencyDatabase` and marker name

Issue - State: closed - Opened by thoree about 5 years ago - 6 comments

#20 - `custom` mutation model

Issue - State: closed - Opened by thoree about 5 years ago - 2 comments

#19 - Changing mutation model

Issue - State: closed - Opened by thoree about 5 years ago - 3 comments

#18 - Implement `as.data.frame()` and `writePed()` for lists

Issue - State: closed - Opened by magnusdv about 5 years ago

#17 - Utility pedigree loading functions

Pull Request - State: closed - Opened by knifecake about 5 years ago

#16 - Some functions not exported?

Issue - State: closed - Opened by thoree over 5 years ago - 1 comment

#15 - request for getSex for list of pedigrees and singletons

Issue - State: closed - Opened by thoree almost 6 years ago - 1 comment
Labels: feature

#14 - `getAlleles()` output and marker names

Issue - State: closed - Opened by thoree almost 6 years ago - 1 comment
Labels: bug

#13 - sorted output from getAlleles

Issue - State: closed - Opened by thoree almost 6 years ago - 1 comment

#12 - getAlleles for X

Issue - State: closed - Opened by thoree almost 6 years ago - 2 comments

#11 - Functions for manipulating the allele matrix

Issue - State: closed - Opened by magnusdv almost 6 years ago - 1 comment
Labels: feature

#10 - `transferMarkers()` doesn't catch duplicated IDs

Issue - State: closed - Opened by magnusdv almost 6 years ago

#9 - transferMarkers changing too much?

Issue - State: closed - Opened by thoree almost 6 years ago - 5 comments

#8 - `addParents()` should add parents before the child

Issue - State: closed - Opened by magnusdv about 6 years ago

#7 - plotPedList not run example

Issue - State: closed - Opened by thoree about 6 years ago - 1 comment

#6 - linearPed

Issue - State: closed - Opened by thoree about 6 years ago - 1 comment

#5 - posCm

Issue - State: closed - Opened by thoree about 6 years ago - 1 comment
Labels: feature

#4 - validate_ped

Issue - State: closed - Opened by thoree about 6 years ago

#3 - Unplottable pedigrees

Issue - State: closed - Opened by magnusdv about 6 years ago - 2 comments
Labels: feature

#2 - Duplicated individuals

Issue - State: closed - Opened by thoree about 6 years ago - 3 comments
Labels: bug

#1 - proportional model in `mutationMatrix()`

Issue - State: closed - Opened by magnusdv about 6 years ago - 1 comment

GitHub / magnusdv/pedtools issues and pull requests