maayanlab/rummagene issues and pull requests

#62 - Searching for a term inside the gene search set results does not seem to work

Issue - State: closed - Opened by AviMaayan about 1 month ago - 1 comment

#62 - Searching for a term inside the gene search set results does not seem to work

Issue - State: closed - Opened by AviMaayan about 1 month ago - 1 comment

#61 - Pages not being indexed

Issue - State: closed - Opened by AviMaayan 6 months ago

#61 - Pages not being indexed

Issue - State: closed - Opened by AviMaayan 6 months ago

#60 - font on rummagene web page not easy to read

Issue - State: open - Opened by PietroD 8 months ago - 3 comments

#60 - font on rummagene web page not easy to read

Issue - State: open - Opened by PietroD 8 months ago - 3 comments

#59 - When doing a term search and looking at a page that it is not the first page, the table pages do not reset when trying a new search

Issue - State: closed - Opened by AviMaayan 11 months ago

#59 - When doing a term search and looking at a page that it is not the first page, the table pages do not reset when trying a new search

Issue - State: closed - Opened by AviMaayan 11 months ago

#58 - Addressing Revisions

Pull Request - State: closed - Opened by u8sand 11 months ago

#58 - Addressing Revisions

Pull Request - State: closed - Opened by u8sand 11 months ago

#52 - Investigate additional steps in `clean` for de-duplication of some gene sets

Issue - State: closed - Opened by u8sand about 1 year ago
Labels: enhancement

#52 - Investigate additional steps in `clean` for de-duplication of some gene sets

Issue - State: closed - Opened by u8sand about 1 year ago
Labels: enhancement

#51 - Attempt to extract additional context for supplemental tables

Issue - State: closed - Opened by u8sand about 1 year ago
Labels: enhancement

#51 - Attempt to extract additional context for supplemental tables

Issue - State: closed - Opened by u8sand about 1 year ago
Labels: enhancement

#50 - Gene Descriptions in Gene Set Dialog

Issue - State: closed - Opened by u8sand about 1 year ago
Labels: enhancement

#50 - Gene Descriptions in Gene Set Dialog

Issue - State: closed - Opened by u8sand about 1 year ago
Labels: enhancement

#49 - Download Button on Results Pages

Issue - State: closed - Opened by u8sand about 1 year ago
Labels: enhancement

#49 - Download Button on Results Pages

Issue - State: closed - Opened by u8sand about 1 year ago
Labels: enhancement

#48 - Screen do not look neat in narrow screen...

Issue - State: closed - Opened by AviMaayan about 1 year ago

#48 - Screen do not look neat in narrow screen...

Issue - State: closed - Opened by AviMaayan about 1 year ago

#47 - Some exact sets show up twice because they come from preprints and published papers of the same paper

Issue - State: closed - Opened by AviMaayan about 1 year ago - 1 comment
Labels: enhancement

#46 - Add reference to new paper to the footer

Issue - State: closed - Opened by AviMaayan about 1 year ago - 1 comment

#46 - Add reference to new paper to the footer

Issue - State: closed - Opened by AviMaayan about 1 year ago - 1 comment

#45 - Term Search in Gene set search should also match pmc titles

Issue - State: closed - Opened by u8sand about 1 year ago
Labels: enhancement

#45 - Term Search in Gene set search should also match pmc titles

Issue - State: closed - Opened by u8sand about 1 year ago
Labels: enhancement

#44 - Add paper titles to Gene Set search

Issue - State: closed - Opened by u8sand about 1 year ago
Labels: enhancement

#44 - Add paper titles to Gene Set search

Issue - State: closed - Opened by u8sand about 1 year ago
Labels: enhancement

#43 - Add abstract similarity column/feature to the gene set search

Issue - State: open - Opened by AviMaayan about 1 year ago - 2 comments
Labels: enhancement

#43 - Add abstract similarity column/feature to the gene set search

Issue - State: open - Opened by AviMaayan about 1 year ago - 2 comments
Labels: enhancement

#42 - Term Categorization

Issue - State: open - Opened by u8sand about 1 year ago - 1 comment
Labels: enhancement

#42 - Term Categorization

Issue - State: open - Opened by u8sand about 1 year ago - 1 comment
Labels: enhancement

#41 - Add Google Analytics tags

Issue - State: closed - Opened by AviMaayan about 1 year ago
Labels: enhancement

#41 - Add Google Analytics tags

Issue - State: closed - Opened by AviMaayan about 1 year ago
Labels: enhancement

#40 - Fixup & unify pagination

Issue - State: closed - Opened by u8sand about 1 year ago
Labels: enhancement

#40 - Fixup & unify pagination

Issue - State: closed - Opened by u8sand about 1 year ago
Labels: enhancement

#39 - add pmc info update in cronjob

Pull Request - State: closed - Opened by giacomomarino about 1 year ago

#39 - add pmc info update in cronjob

Pull Request - State: closed - Opened by giacomomarino about 1 year ago

#38 - The sentence in the PMC search has the number of publications containing gene sets, not the number of gene sets

Issue - State: closed - Opened by AviMaayan about 1 year ago

#38 - The sentence in the PMC search has the number of publications containing gene sets, not the number of gene sets

Issue - State: closed - Opened by AviMaayan about 1 year ago

#37 - Move "source code" to left side of footer

Issue - State: closed - Opened by AviMaayan about 1 year ago

#37 - Move "source code" to left side of footer

Issue - State: closed - Opened by AviMaayan about 1 year ago

#36 - Update abstract and boldface numbers

Issue - State: closed - Opened by AviMaayan about 1 year ago

#36 - Update abstract and boldface numbers

Issue - State: closed - Opened by AviMaayan about 1 year ago

#35 - Example in the PMC search says that the results contain 100 entries but there are 99 entries in table

Issue - State: closed - Opened by AviMaayan about 1 year ago - 2 comments

#35 - Example in the PMC search says that the results contain 100 entries but there are 99 entries in table

Issue - State: closed - Opened by AviMaayan about 1 year ago - 2 comments

#34 - Can we get rid of this column. It does not look like it is used.

Issue - State: closed - Opened by AviMaayan about 1 year ago

#34 - Can we get rid of this column. It does not look like it is used.

Issue - State: closed - Opened by AviMaayan about 1 year ago

#33 - Can we close this "gap"

Issue - State: closed - Opened by AviMaayan about 1 year ago

#33 - Can we close this "gap"

Issue - State: closed - Opened by AviMaayan about 1 year ago

#32 - When clicking on "input gene set" in the results page, you get a blank popup

Issue - State: closed - Opened by AviMaayan about 1 year ago

#32 - When clicking on "input gene set" in the results page, you get a blank popup

Issue - State: closed - Opened by AviMaayan about 1 year ago

#31 - Add this part to the title of table results of the PMC and table searches

Issue - State: closed - Opened by AviMaayan about 1 year ago

#31 - Add this part to the title of table results of the PMC and table searches

Issue - State: closed - Opened by AviMaayan about 1 year ago

#30 - Make font of PMC and table search results smaller to match the font size of the gene set search

Issue - State: closed - Opened by AviMaayan about 1 year ago

#30 - Make font of PMC and table search results smaller to match the font size of the gene set search

Issue - State: closed - Opened by AviMaayan about 1 year ago

#29 - Results from PMC search are not sorted

Issue - State: open - Opened by AviMaayan about 1 year ago - 1 comment

#29 - Results from PMC search are not sorted

Issue - State: open - Opened by AviMaayan about 1 year ago - 1 comment

#28 - Add buttons to pop-up when clicking on a gene set in the gene search table results

Issue - State: closed - Opened by AviMaayan about 1 year ago

#28 - Add buttons to pop-up when clicking on a gene set in the gene search table results

Issue - State: closed - Opened by AviMaayan about 1 year ago

#27 - In table title search: Your search term is contained in 306 gene sets. -> Your search term is found in the table titles of 306 gene sets.

Issue - State: closed - Opened by AviMaayan about 1 year ago

#27 - In table title search: Your search term is contained in 306 gene sets. -> Your search term is found in the table titles of 306 gene sets.

Issue - State: closed - Opened by AviMaayan about 1 year ago

#26 - Download should have a date stamp

Issue - State: closed - Opened by AviMaayan about 1 year ago

#26 - Download should have a date stamp

Issue - State: closed - Opened by AviMaayan about 1 year ago

#25 - Entering a non-alpha numeric character in the table search produced an error

Issue - State: closed - Opened by AviMaayan about 1 year ago - 2 comments

#25 - Entering a non-alpha numeric character in the table search produced an error

Issue - State: closed - Opened by AviMaayan about 1 year ago - 2 comments

#24 - When entering jibrish in the gene set search it does not tell you that it did not find anything

Issue - State: closed - Opened by AviMaayan about 1 year ago

#24 - When entering jibrish in the gene set search it does not tell you that it did not find anything

Issue - State: closed - Opened by AviMaayan about 1 year ago

#23 - Bring back Download and About to the top of the page

Issue - State: closed - Opened by AviMaayan about 1 year ago

#23 - Bring back Download and About to the top of the page

Issue - State: closed - Opened by AviMaayan about 1 year ago

#22 - Add this license type to the footer. Link it to here: https://creativecommons.org/licenses/by-nc/4.0/

Issue - State: closed - Opened by AviMaayan about 1 year ago

#22 - Add this license type to the footer. Link it to here: https://creativecommons.org/licenses/by-nc/4.0/

Issue - State: closed - Opened by AviMaayan about 1 year ago

#21 - The contact link in the footer should open in a new tab

Issue - State: closed - Opened by AviMaayan about 1 year ago

#20 - Link to the GraphQL API should be opened in a new tab

Issue - State: closed - Opened by AviMaayan about 1 year ago

#19 - Unclear why it is always saying top 5000 even for searches that clearly return much less PMCIDs

Issue - State: closed - Opened by AviMaayan about 1 year ago

#18 - When querying large sets there is a delay. It would be nice to bring back the animation of the logo.

Issue - State: closed - Opened by AviMaayan about 1 year ago

#17 - Search does not work in the Table search tab

Issue - State: closed - Opened by AviMaayan about 1 year ago

#16 - Add Gene Set Pair Search

Issue - State: open - Opened by u8sand about 1 year ago
Labels: enhancement

#15 - Add title sentences to the results tables

Issue - State: closed - Opened by AviMaayan about 1 year ago

#14 - make the other search pages look like the landing page

Issue - State: closed - Opened by AviMaayan about 1 year ago - 1 comment

#13 - Add gene set pair search and move API, download, and about to footer

Issue - State: closed - Opened by AviMaayan about 1 year ago - 4 comments

#12 - WIP: Bot for weekly DB updated

Pull Request - State: closed - Opened by u8sand about 1 year ago
Labels: enhancement

#11 - Add table title search to the gene set search results table so you can search within the search results for keywords

Issue - State: closed - Opened by AviMaayan about 1 year ago

#10 - Make table title and PMC search landing pages look more like the gene set search

Issue - State: closed - Opened by AviMaayan about 1 year ago

#9 - When clicking on the Table Title Search the animated appears and then disappears

Issue - State: closed - Opened by AviMaayan about 1 year ago - 1 comment
Labels: bug

#8 - https://rummagene.dev.maayanlab.cloud/pubmed-search?q=diabetes

Issue - State: closed - Opened by AviMaayan about 1 year ago - 1 comment

#7 - Create a batch job that updates the gene sets in the database weekly

Issue - State: closed - Opened by AviMaayan about 1 year ago
Labels: enhancement

#6 - While the search is going the text below the gif file should say:

Issue - State: closed - Opened by AviMaayan about 1 year ago - 1 comment
Labels: enhancement

#5 - Add "Visualize Results" button to the results of the three search tabs

Issue - State: open - Opened by AviMaayan about 1 year ago
Labels: enhancement

#4 - Gene set search - Folding the results on the top left corner is not that useful

Issue - State: closed - Opened by AviMaayan about 1 year ago

#3 - Gene set search - you can only see the top ten (no way to flip to the next matching signatures)

Issue - State: closed - Opened by AviMaayan about 1 year ago - 1 comment

#2 - Fix URL to code and issue repo on GitHub based on the new name

Issue - State: closed - Opened by AviMaayan about 1 year ago

#1 - Feedback from Avi

Issue - State: closed - Opened by u8sand over 1 year ago

GitHub / maayanlab/rummagene issues and pull requests