maayanlab/multiomics2targets issues and pull requests

#48 - Edits to the Discussion and Conclusions

Issue - State: closed - Opened by AviMaayan 6 months ago

#48 - Edits to the Discussion and Conclusions

Issue - State: closed - Opened by AviMaayan 6 months ago

#47 - Changes to this sentence

Issue - State: closed - Opened by AviMaayan 6 months ago

#47 - Changes to this sentence

Issue - State: closed - Opened by AviMaayan 6 months ago

#46 - Changes to this sentence

Issue - State: closed - Opened by AviMaayan 6 months ago

#45 - Changes to this sentence

Issue - State: closed - Opened by AviMaayan 6 months ago

#45 - Changes to this sentence

Issue - State: closed - Opened by AviMaayan 6 months ago

#44 - Left align these sentences

Issue - State: closed - Opened by AviMaayan 6 months ago

#44 - Left align these sentences

Issue - State: closed - Opened by AviMaayan 6 months ago

#43 - Phosphoproteomic -> Phosphoproteomics

Issue - State: closed - Opened by AviMaayan 6 months ago

#43 - Phosphoproteomic -> Phosphoproteomics

Issue - State: closed - Opened by AviMaayan 6 months ago

#42 - Change to "co-mentions"

Issue - State: closed - Opened by AviMaayan 6 months ago

#42 - Change to "co-mentions"

Issue - State: closed - Opened by AviMaayan 6 months ago

#41 - Expand title to say "Validation of Cancer Targets with DepMap and Literature Co-Mentions"

Issue - State: closed - Opened by AviMaayan 6 months ago

#41 - Expand title to say "Validation of Cancer Targets with DepMap and Literature Co-Mentions"

Issue - State: closed - Opened by AviMaayan 6 months ago

#40 - View in clustergrammer is missing metadata

Issue - State: closed - Opened by AviMaayan 6 months ago

#40 - View in clustergrammer is missing metadata

Issue - State: closed - Opened by AviMaayan 6 months ago

#39 - View in clustergrammer should be two colors too (blue and red)

Issue - State: closed - Opened by AviMaayan 6 months ago

#39 - View in clustergrammer should be two colors too (blue and red)

Issue - State: closed - Opened by AviMaayan 6 months ago

#38 - View in Clustergrammer should open in a new tab

Issue - State: closed - Opened by AviMaayan 6 months ago

#38 - View in Clustergrammer should open in a new tab

Issue - State: closed - Opened by AviMaayan 6 months ago

#37 - Sentences should not end with a proposition "by the number of healthy tissues and cell type background atlases that were used to identify the same target"

Issue - State: closed - Opened by AviMaayan 6 months ago

#37 - Sentences should not end with a proposition "by the number of healthy tissues and cell type background atlases that were used to identify the same target"

Issue - State: closed - Opened by AviMaayan 6 months ago

#36 - Minor edits to the text that calls figure 4

Issue - State: closed - Opened by AviMaayan 6 months ago

#36 - Minor edits to the text that calls figure 4

Issue - State: closed - Opened by AviMaayan 6 months ago

#35 - Replace "genes" with "targets" if possible in this write-up

Issue - State: closed - Opened by AviMaayan 6 months ago

#35 - Replace "genes" with "targets" if possible in this write-up

Issue - State: closed - Opened by AviMaayan 6 months ago

#34 - Update abstract and better align title

Issue - State: closed - Opened by AviMaayan 6 months ago

#34 - Update abstract and better align title

Issue - State: closed - Opened by AviMaayan 6 months ago

#33 - Change the app name to Multiomics2Targets

Issue - State: closed - Opened by AviMaayan 6 months ago

#33 - Change the app name to Multiomics2Targets

Issue - State: closed - Opened by AviMaayan 6 months ago

#32 - Update title to "Multiomics2Paper: Computational Workflow to Identify Pathways and Targets for Cancer Cohorts Profiled with Transcriptomics, Proteomics, and Phosphoproteomics"

Issue - State: closed - Opened by AviMaayan 6 months ago

#32 - Update title to "Multiomics2Paper: Computational Workflow to Identify Pathways and Targets for Cancer Cohorts Profiled with Transcriptomics, Proteomics, and Phosphoproteomics"

Issue - State: closed - Opened by AviMaayan 6 months ago

#31 - Update title to "Multiomics2Paper: Computational Workflow to Identify Pathways and Targets for Cancer Cohorts Profiled with Transcriptomics, Proteomics, and Phosphoproteomics

Issue - State: closed - Opened by AviMaayan 6 months ago

#31 - Update title to "Multiomics2Paper: Computational Workflow to Identify Pathways and Targets for Cancer Cohorts Profiled with Transcriptomics, Proteomics, and Phosphoproteomics

Issue - State: closed - Opened by AviMaayan 6 months ago

#30 - Add counter that shows how many times the app was used... Similar to the Appyter counters.

Issue - State: closed - Opened by AviMaayan 6 months ago
Labels: enhancement

#30 - Add counter that shows how many times the app was used... Similar to the Appyter counters.

Issue - State: closed - Opened by AviMaayan 6 months ago
Labels: enhancement

#29 - Can the examples provided on the site be cached?

Issue - State: closed - Opened by AviMaayan 6 months ago - 1 comment
Labels: enhancement

#29 - Can the examples provided on the site be cached?

Issue - State: closed - Opened by AviMaayan 6 months ago - 1 comment
Labels: enhancement

#28 - The period in "Fig X" should be here "Fig. X" instead of here "Fig X."

Issue - State: closed - Opened by AviMaayan 6 months ago
Labels: bug

#28 - The period in "Fig X" should be here "Fig. X" instead of here "Fig X."

Issue - State: closed - Opened by AviMaayan 6 months ago
Labels: bug

#27 - When loading the data from one of the CPTAC studies this error is flashing for a split second

Issue - State: open - Opened by AviMaayan 6 months ago
Labels: bug

#27 - When loading the data from one of the CPTAC studies this error is flashing for a split second

Issue - State: open - Opened by AviMaayan 6 months ago
Labels: bug

#26 - ChEA analysis crushes when only uploading transcriptomics

Issue - State: closed - Opened by AviMaayan 7 months ago

#26 - ChEA analysis crushes when only uploading transcriptomics

Issue - State: closed - Opened by AviMaayan 7 months ago

#25 - Tailor the title and abstract to be specifics for each example

Issue - State: closed - Opened by AviMaayan 7 months ago

#25 - Tailor the title and abstract to be specifics for each example

Issue - State: closed - Opened by AviMaayan 7 months ago

#24 - This sentence can be lower case

Issue - State: closed - Opened by AviMaayan 7 months ago - 1 comment

#24 - This sentence can be lower case

Issue - State: closed - Opened by AviMaayan 7 months ago - 1 comment

#23 - move load all examples button to the top

Issue - State: closed - Opened by AviMaayan 7 months ago

#23 - move load all examples button to the top

Issue - State: closed - Opened by AviMaayan 7 months ago

#22 - Add load example button so it is clear for the user how they can load examples

Issue - State: closed - Opened by AviMaayan 7 months ago

#22 - Add load example button so it is clear for the user how they can load examples

Issue - State: closed - Opened by AviMaayan 7 months ago

#21 - When uploading only proteomics you get the following error

Issue - State: closed - Opened by AviMaayan 7 months ago

#21 - When uploading only proteomics you get the following error

Issue - State: closed - Opened by AviMaayan 7 months ago

#20 - Merge eden DepMap target validation

Pull Request - State: closed - Opened by giacomomarino 7 months ago

#20 - Merge eden DepMap target validation

Pull Request - State: closed - Opened by giacomomarino 7 months ago

#19 - Rename the PDF output file with a more descriptive name

Issue - State: closed - Opened by AviMaayan 7 months ago

#19 - Rename the PDF output file with a more descriptive name

Issue - State: closed - Opened by AviMaayan 7 months ago

#18 - Minor edits to Results section

Issue - State: closed - Opened by AviMaayan 7 months ago

#18 - Minor edits to Results section

Issue - State: closed - Opened by AviMaayan 7 months ago

#17 - Close white space gap

Issue - State: closed - Opened by AviMaayan 7 months ago

#16 - Minor edits to text in results

Issue - State: closed - Opened by AviMaayan 7 months ago

#15 - Remove this subtitle

Issue - State: closed - Opened by AviMaayan 7 months ago

#14 - Subheadings under Methods should be italicized and unbolded

Issue - State: closed - Opened by AviMaayan 7 months ago

#13 - Too many DEGs

Issue - State: closed - Opened by AviMaayan 7 months ago

#12 - Update RummaGEO with the new speeding enhancements applied to Rummagene

Issue - State: closed - Opened by AviMaayan 7 months ago - 3 comments

#11 - Restructure the report to look more like a journal article

Issue - State: closed - Opened by AviMaayan 7 months ago - 1 comment

#10 - Diagram in the output report should change if not all the parts were uploaded

Issue - State: closed - Opened by AviMaayan 7 months ago

#9 - Question marks on the input page respond too slowly

Issue - State: closed - Opened by AviMaayan 7 months ago

#8 - Add export to .docx file

Issue - State: open - Opened by giacomomarino 7 months ago
Labels: enhancement

#7 - Export report as a PDF (maybe also as a DOCX file)

Issue - State: closed - Opened by AviMaayan 7 months ago

#6 - Add more example files for the different CPTAC cancer types (one click upload)

Issue - State: closed - Opened by AviMaayan 7 months ago
Labels: enhancement

#5 - Footer color should be in turquoise

Issue - State: closed - Opened by AviMaayan 7 months ago

#4 - Enrichr bar plots should be in the same color scheme as the rest of the app (light blue or turquoise)

Issue - State: closed - Opened by AviMaayan 7 months ago

#3 - Colors of heatmaps need to be fixed

Issue - State: closed - Opened by AviMaayan 7 months ago

#2 - When pressing SUMBIT with no data there should be an error message

Issue - State: closed - Opened by AviMaayan 7 months ago

#1 - Rename the URL to multiomics2paper

Issue - State: closed - Opened by AviMaayan 7 months ago

GitHub / maayanlab/multiomics2targets issues and pull requests