luispedro/waldo issues and pull requests

#75 - Merge pull request #1 from luispedro/master

Pull Request - State: closed - Opened by icaoberg over 9 years ago - 1 comment

#74 - Deploying the database in another location

Issue - State: open - Opened by icaoberg about 10 years ago - 11 comments

#73 - Unable to run Waldo in Ubuntu 12.04.5

Issue - State: closed - Opened by icaoberg about 10 years ago - 10 comments

#72 - BUG Removed the IPI field from the Uniprot loader.

Pull Request - State: closed - Opened by magsol over 10 years ago - 2 comments

#71 - Failed to run install.sh

Issue - State: closed - Opened by icaoberg over 10 years ago - 1 comment

#70 - Compute statistics on multiple locations

Issue - State: closed - Opened by luispedro over 14 years ago - 1 comment

#69 - Compute statistics on evidence codes in Uniprot

Issue - State: open - Opened by luispedro over 14 years ago

#68 - Full text search

Issue - State: closed - Opened by luispedro over 14 years ago - 1 comment

#67 - MGI gene_associations file changed

Issue - State: closed - Opened by magsol over 14 years ago - 2 comments
Labels: bug

#66 - Use PRAGMA SYNCHRONOUS = OFF in sqlite

Issue - State: closed - Opened by luispedro over 14 years ago - 1 comment

#65 - Make uniprot loading faster

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments

#64 - Statistics should have a histogram of GO term usage

Issue - State: open - Opened by magsol almost 15 years ago

#64 - Statistics should have a histogram of GO term usage

Issue - State: open - Opened by magsol almost 15 years ago

#63 - Original entry should link to entry in the database

Issue - State: closed - Opened by luispedro almost 15 years ago

#62 - Auto detect ID Type

Issue - State: closed - Opened by luispedro almost 15 years ago - 3 comments

#61 - Unit tests failing

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment
Labels: bug

#61 - Unit tests failing

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment
Labels: bug

#60 - Modify statistics.py to write direct SQL queries

Issue - State: closed - Opened by magsol almost 15 years ago - 5 comments
Labels: maybe

#59 - Search by sequence

Issue - State: open - Opened by luispedro almost 15 years ago
Labels: maybe

#59 - Search by sequence

Issue - State: open - Opened by luispedro almost 15 years ago
Labels: maybe

#58 - Integrate LOCATE images

Issue - State: closed - Opened by magsol almost 15 years ago - 1 comment
Labels: Shannon, nero

#58 - Integrate LOCATE images

Issue - State: closed - Opened by magsol almost 15 years ago - 1 comment
Labels: Shannon, nero

#57 - Retrieve sequence from ENSEMBL Gene ID for Mus Musculus

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments
Labels: nero

#57 - Retrieve sequence from ENSEMBL Gene ID for Mus Musculus

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments
Labels: nero

#56 - LOCATE load.py should use zipfile to read

Issue - State: closed - Opened by magsol almost 15 years ago - 2 comments
Labels: bug

#56 - LOCATE load.py should use zipfile to read

Issue - State: closed - Opened by magsol almost 15 years ago - 2 comments
Labels: bug

#55 - Statistics.py should do its computations in SQL

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments

#55 - Statistics.py should do its computations in SQL

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments

#54 - Document statistics.py

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment

#53 - Download from update.sh not working for esldb

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment
Labels: bug

#53 - Download from update.sh not working for esldb

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment
Labels: bug

#52 - Add OrganelleDB as a data source

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment

#51 - Install on juggernaut2

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment

#50 - MGI type conversion errors with "pubmedid"

Issue - State: closed - Opened by magsol almost 15 years ago - 3 comments
Labels: bug

#50 - MGI type conversion errors with "pubmedid"

Issue - State: closed - Opened by magsol almost 15 years ago - 3 comments
Labels: bug

#49 - Create configuration for separate "development" and "production" settings

Issue - State: closed - Opened by magsol almost 15 years ago - 3 comments
Labels: Shannon, maybe

#49 - Create configuration for separate "development" and "production" settings

Issue - State: closed - Opened by magsol almost 15 years ago - 3 comments
Labels: Shannon, maybe

#48 - Uniprot TimeoutError

Issue - State: closed - Opened by magsol almost 15 years ago - 3 comments
Labels: bug

#48 - Uniprot TimeoutError

Issue - State: closed - Opened by magsol almost 15 years ago - 3 comments
Labels: bug

#47 - All loaders should follow the load(dirname,...) convention

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment
Labels: easy

#47 - All loaders should follow the load(dirname,...) convention

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment
Labels: easy

#46 - Write command line tools to access information in the waldo database

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment

#45 - Set environment for deployment

Issue - State: closed - Opened by luispedro almost 15 years ago - 4 comments
Labels: maybe

#44 - Get other prediction tools integrated

Issue - State: open - Opened by luispedro almost 15 years ago
Labels: needs to be broken up

#44 - Get other prediction tools integrated

Issue - State: open - Opened by luispedro almost 15 years ago
Labels: needs to be broken up

#43 - Implement user-feedback on information

Issue - State: open - Opened by luispedro almost 15 years ago
Labels: needs to be broken up

#43 - Implement user-feedback on information

Issue - State: open - Opened by luispedro almost 15 years ago
Labels: needs to be broken up

#42 - Add locate + esldb download to create_tables.py & Load_tables.py

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment
Labels: hadrian, Shannon, easy, bug

#42 - Add locate + esldb download to create_tables.py & Load_tables.py

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment
Labels: hadrian, Shannon, easy, bug

#41 - Add locate + esldb download to update.sh

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments
Labels: hadrian, Shannon, easy, bug

#41 - Add locate + esldb download to update.sh

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments
Labels: hadrian, Shannon, easy, bug

#40 - Add GO Name to GO ID display

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment
Labels: woof, nero

#39 - Map full GO to MGI's goslim

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments

#38 - Create REST API

Issue - State: open - Opened by luispedro almost 15 years ago

#38 - Create REST API

Issue - State: open - Opened by luispedro almost 15 years ago

#37 - Add SLIF as a source

Issue - State: closed - Opened by luispedro almost 15 years ago

#36 - Add HPA data as a source

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments
Labels: Shannon, needs to be broken up, nero

#35 - Add Pubchem as a source

Issue - State: open - Opened by luispedro almost 15 years ago
Labels: needs to be broken up

#35 - Add Pubchem as a source

Issue - State: open - Opened by luispedro almost 15 years ago
Labels: needs to be broken up

#34 - Parse the <comment type="subcellular location"> entries in uniprot

Issue - State: closed - Opened by luispedro almost 15 years ago

#33 - Pick free CSS template and apply it to website

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment

#33 - Pick free CSS template and apply it to website

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment

#32 - Remove old files

Issue - State: closed - Opened by luispedro almost 15 years ago - 5 comments

#32 - Remove old files

Issue - State: closed - Opened by luispedro almost 15 years ago - 5 comments

#31 - Merge GO Annotation tables or, at least, standartise them

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment

#30 - Uniprot should load all GO terms, not just cellular_component

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment

#29 - Loaders should be able to only load from one species

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment

#28 - Remove files.py files

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments
Labels: easy

#28 - Remove files.py files

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments
Labels: easy

#27 - Have load() functions return the number of entries loaded

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments
Labels: Luis, easy

#27 - Have load() functions return the number of entries loaded

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments
Labels: Luis, easy

#26 - Parse evidence codes

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment

#25 - Retreive Pubmed fulltext by PUBMED ID

Issue - State: open - Opened by luispedro almost 15 years ago - 1 comment

#25 - Retreive Pubmed fulltext by PUBMED ID

Issue - State: open - Opened by luispedro almost 15 years ago - 1 comment

#24 - Retreive Pubmed abstract by PUBMED ID

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment

#23 - Change repository name to waldo

Issue - State: closed - Opened by luispedro almost 15 years ago - 3 comments
Labels: Luis, easy

#23 - Change repository name to waldo

Issue - State: closed - Opened by luispedro almost 15 years ago - 3 comments
Labels: Luis, easy

#22 - Reorganise code structure

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments
Labels: Luis, easy

#22 - Reorganise code structure

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments
Labels: Luis, easy

#21 - Overall Project Name

Issue - State: closed - Opened by magsol almost 15 years ago - 2 comments

#21 - Overall Project Name

Issue - State: closed - Opened by magsol almost 15 years ago - 2 comments

#20 - Parse uniprot citation field to extract meaningful information

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment

#19 - Convert to virtualenv/pip

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment

#18 - Accept Ensembl Peptide IDs

Issue - State: closed - Opened by luispedro almost 15 years ago
Labels: nero

#18 - Accept Ensembl Peptide IDs

Issue - State: closed - Opened by luispedro almost 15 years ago
Labels: nero

#17 - Parse text of cited papers (full or abstract) for setences supporting conclusion

Issue - State: open - Opened by luispedro almost 15 years ago
Labels: needs to be broken up

#17 - Parse text of cited papers (full or abstract) for setences supporting conclusion

Issue - State: open - Opened by luispedro almost 15 years ago
Labels: needs to be broken up

#16 - Integrate SherLoc and MultiLoc

Issue - State: open - Opened by luispedro almost 15 years ago
Labels: needs to be broken up, nero

#16 - Integrate SherLoc and MultiLoc

Issue - State: open - Opened by luispedro almost 15 years ago
Labels: needs to be broken up, nero

#15 - Write a definition of done.

Issue - State: closed - Opened by luispedro almost 15 years ago
Labels: hadrian, Luis

#15 - Write a definition of done.

Issue - State: closed - Opened by luispedro almost 15 years ago
Labels: hadrian, Luis

#14 - Basic django website

Issue - State: closed - Opened by luispedro almost 15 years ago - 4 comments
Labels: hadrian, Luis

#14 - Basic django website

Issue - State: closed - Opened by luispedro almost 15 years ago - 4 comments
Labels: hadrian, Luis

#13 - Search by Uniprot ID

Issue - State: closed - Opened by luispedro almost 15 years ago - 3 comments
Labels: nero, bug

#13 - Search by Uniprot ID

Issue - State: closed - Opened by luispedro almost 15 years ago - 3 comments
Labels: nero, bug

#12 - Search by Protein Name

Issue - State: closed - Opened by luispedro almost 15 years ago - 2 comments
Labels: nero

#11 - Search by MGI ID

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment
Labels: nero

#11 - Search by MGI ID

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment
Labels: nero

#10 - Search by ENSEMBL Gene or Peptide ID

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment

#10 - Search by ENSEMBL Gene or Peptide ID

Issue - State: closed - Opened by luispedro almost 15 years ago - 1 comment

GitHub / luispedro/waldo issues and pull requests