ltla/csaw issues and pull requests

#21 - Unit test failure on Mac arm64

Issue - State: closed - Opened by hpages about 1 year ago - 6 comments

#20 - CSI indexes

Issue - State: open - Opened by MorexV3CAGE about 1 year ago - 4 comments

#19 - Collecting windowCounts-objects in a list

Issue - State: closed - Opened by aghr over 1 year ago - 1 comment

#18 - raw pvalue distribution

Issue - State: open - Opened by nservant over 2 years ago - 1 comment

#17 - filterWindowsLocal assay colnames

Issue - State: closed - Opened by nservant over 2 years ago - 1 comment

#16 - filterWindowsGlobal() function running is extremely long

Issue - State: open - Opened by RacheliRap about 3 years ago - 1 comment

#15 - how to use the scaled factor to normalize the bigwig files of IP when compared with negative control?

Issue - State: open - Opened by eggprincess917 over 3 years ago - 7 comments

#14 - Improved the user-friendliness of the normalization functions.

Pull Request - State: closed - Opened by LTLA about 4 years ago

#13 - Error in .extractSE(bam.file, where = where, param = param): failed to open BAM index at ...

Issue - State: closed - Opened by muhammed-ali over 4 years ago - 2 comments

#12 - mergeResults returns two FDR values in $best

Issue - State: open - Opened by malcook over 4 years ago - 4 comments

#11 - Fix documentation about empiricalFDR's representative log-FC

Issue - State: closed - Opened by LTLA over 4 years ago

#10 - going defunct before removal?

Issue - State: closed - Opened by hpages about 5 years ago - 1 comment

#9 - Downstream analysis of Csaw differential binding region

Issue - State: closed - Opened by EllieDuan over 5 years ago - 4 comments

#8 - plotMD in Csaw

Issue - State: closed - Opened by EllieDuan over 5 years ago - 2 comments

#7 - annotation error

Issue - State: closed - Opened by EllieDuan over 5 years ago - 2 comments

#6 - correlateReads/extractSE error: position vector should be 1-based

Issue - State: closed - Opened by plbaldoni over 5 years ago - 2 comments

#5 - "xxx.bam" indexes as "xxx.bai" or "xxx.bam.bai"

Issue - State: open - Opened by russHyde over 5 years ago - 2 comments

#4 - Htsfree

Pull Request - State: open - Opened by LTLA over 5 years ago - 26 comments

#3 - Refactor to use GenomicAlignments

Issue - State: open - Opened by LTLA over 5 years ago

#2 - Fix discard for paired end reads