Ecosyste.ms: Issues

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GitHub / lskatz/fasten issues and pull requests

#36 - use subcommand instead of so many commands

Issue - State: open - Opened by jianshu93 4 months ago - 1 comment
Labels: wontfix

#35 - fastq/fastq mergepe

Issue - State: closed - Opened by jianshu93 4 months ago - 1 comment

#33 - Fasten mutate

Pull Request - State: closed - Opened by lskatz 10 months ago

#32 - [suggestion] Document, eventually enforce, input format

Issue - State: open - Opened by telatin 10 months ago

#32 - [suggestion] Document, eventually enforce, input format

Issue - State: closed - Opened by telatin 10 months ago - 1 comment

#31 - Suggestion: a Makefile to automate tasks

Pull Request - State: closed - Opened by telatin 10 months ago

#31 - Suggestion: a Makefile to automate tasks

Pull Request - State: open - Opened by telatin 10 months ago

#30 - Tests

Pull Request - State: closed - Opened by telatin 10 months ago - 1 comment

#30 - Tests

Pull Request - State: open - Opened by telatin 10 months ago - 1 comment

#29 - fastq_mutate should always give -m mutations?

Issue - State: closed - Opened by telatin 10 months ago

#28 - fasten_inspect: throw error on FASTA?

Pull Request - State: closed - Opened by telatin 10 months ago

#26 - JOSS Paper citations

Issue - State: closed - Opened by bovee about 1 year ago - 1 comment

#25 - Clarify README summary

Issue - State: closed - Opened by bovee about 1 year ago - 1 comment

#24 - Update crates version in README

Pull Request - State: closed - Opened by bovee about 1 year ago - 1 comment

#23 - Consider adding documentation about `cargo install fasten`

Issue - State: closed - Opened by bovee about 1 year ago - 1 comment

#22 - Consider std::io::Stdin instead of File('/dev/stdin')

Issue - State: open - Opened by bovee about 1 year ago - 1 comment

#21 - Update bibliography and paper markdown

Pull Request - State: closed - Opened by telatin about 1 year ago - 1 comment

#20 - JOSS Review

Issue - State: closed - Opened by telatin about 1 year ago - 8 comments

#19 - Docker fixes

Pull Request - State: closed - Opened by lskatz about 1 year ago

#18 - Joss editorial revision

Pull Request - State: closed - Opened by lskatz about 1 year ago

#17 - Joss

Pull Request - State: closed - Opened by lskatz about 1 year ago

#16 - Fasten repair

Pull Request - State: closed - Opened by lskatz about 1 year ago

#15 - Feature Request: handle seqlen != quallen

Issue - State: closed - Opened by chrisgulvik about 1 year ago - 3 comments

#14 - Fasten normalize

Pull Request - State: closed - Opened by lskatz almost 2 years ago

#13 - typo in installation instruction

Pull Request - State: closed - Opened by telatin almost 2 years ago - 1 comment

#10 - Add in --version

Pull Request - State: closed - Opened by lskatz over 2 years ago

#9 - Inline docs

Pull Request - State: closed - Opened by lskatz over 2 years ago

#8 - Unit testing

Pull Request - State: closed - Opened by lskatz over 2 years ago

#7 - Container

Pull Request - State: closed - Opened by lskatz over 2 years ago

#6 - fasten_trim reporting what it trimmed

Issue - State: open - Opened by lskatz about 3 years ago

#5 - Concurrency

Pull Request - State: closed - Opened by lskatz over 3 years ago

#4 - add dockerfile

Pull Request - State: closed - Opened by jhphan over 3 years ago

#3 - docs on what fasten_validate does?

Issue - State: closed - Opened by kapsakcj about 4 years ago - 2 comments

#2 - numcpus does not work

Issue - State: open - Opened by lskatz over 4 years ago - 10 comments

#1 - add progress meter

Issue - State: closed - Opened by lskatz about 5 years ago - 1 comment