lpantano/seqcluster issues and pull requests

#59 - s/l/mystats.py: migrate to scipy.stats.binomtest.

Pull Request - State: closed - Opened by emollier 6 months ago - 4 comments

#58 - MIRALIGNER/question

Issue - State: closed - Opened by Alarabi1980 12 months ago - 6 comments

#57 - Devel

Pull Request - State: open - Opened by lpantano about 1 year ago

#56 - An error occurred when running the program

Issue - State: open - Opened by charles-xue over 1 year ago - 4 comments

#55 - update main with umi error fix

Pull Request - State: closed - Opened by lpantano almost 3 years ago

#54 - fix umi bug

Pull Request - State: closed - Opened by abartlett004 almost 3 years ago

#53 - Unable to find documentation

Issue - State: closed - Opened by SarahLuca over 3 years ago - 4 comments

#52 - fix bug in report making profile with long tail

Pull Request - State: closed - Opened by lpantano over 4 years ago

#51 - possible error with pandas 1.1

Issue - State: open - Opened by lpantano over 4 years ago

#50 - Bioconda -> Github is wrong link

Issue - State: open - Opened by harish0201 over 4 years ago

#49 - Questions about using the seqcluster json output for some pipeline analysis

Issue - State: closed - Opened by BioinfoHub-PeiQinNg over 5 years ago - 3 comments

#48 - can python dateutils dependency go?

Issue - State: closed - Opened by smoe over 5 years ago - 3 comments

#47 - TypeError: 'map' object is not subscriptable

Issue - State: closed - Opened by lurebgi over 5 years ago - 8 comments

#46 - More detail in log for make_profile

Pull Request - State: closed - Opened by smoe over 5 years ago - 5 comments

#45 - nosetests is not in source tree

Pull Request - State: closed - Opened by smoe over 5 years ago

#44 - Don't demand local amcharts js library

Pull Request - State: closed - Opened by smoe over 5 years ago

#43 - amchart - redistributable in source tree?

Issue - State: closed - Opened by smoe over 5 years ago - 3 comments

#42 - Series of beautifications, typos

Pull Request - State: closed - Opened by smoe over 5 years ago - 1 comment

#41 - Devel

Pull Request - State: closed - Opened by lpantano almost 6 years ago

#40 - proressbar new api; lazy output decoding

Pull Request - State: closed - Opened by kkarolis almost 6 years ago - 2 comments

#39 - issue in seqcluster prepare

Issue - State: closed - Opened by kisun about 6 years ago - 11 comments

#38 - Python 3 support: progressbar2 and list/iterator fixes

Pull Request - State: closed - Opened by chapmanb about 6 years ago - 3 comments

#37 - Python 3 support: use general fixes and six for 2 and 3 support

Pull Request - State: closed - Opened by chapmanb about 6 years ago - 1 comment

#36 - No UMI transform specified, assuming pre-transformed data.

Issue - State: closed - Opened by jxshi about 6 years ago - 5 comments

#35 - seqcluster executable not found when testing

Issue - State: closed - Opened by smoe over 6 years ago - 1 comment

#34 - Helping transition to Python3

Pull Request - State: closed - Opened by smoe over 6 years ago - 5 comments

#33 - Please clean-up or git-ignore data/examples/miraligner/sim_isomir_unique.fa

Issue - State: closed - Opened by smoe over 6 years ago - 2 comments

#32 - python setup.py test - init.py argument missing

Issue - State: closed - Opened by smoe over 6 years ago - 4 comments

#31 - Explicit paths for modules

Pull Request - State: closed - Opened by smoe over 6 years ago - 4 comments

#30 - First round of Python3 compatibility

Pull Request - State: closed - Opened by smoe over 6 years ago - 4 comments

#29 - running from bcbio pipeline

Issue - State: closed - Opened by ahsen1402 almost 7 years ago - 7 comments

#28 - Unfamiliar output from bcbio

Issue - State: closed - Opened by gnvalbuena almost 7 years ago - 3 comments

#27 - miRNA annotation with seqcluster from BAM file

Issue - State: closed - Opened by svm-zhang about 7 years ago - 12 comments

#26 - error install

Issue - State: closed - Opened by wengqi123 over 7 years ago - 8 comments

#25 - new alignment tool for srna

Issue - State: closed - Opened by lpantano over 7 years ago
Labels: enhancement, question

#24 - issue in seqcluster collapser

Issue - State: closed - Opened by YangZituo almost 8 years ago - 2 comments

#23 - Issue with IsomirDataSeqFromFiles

Issue - State: closed - Opened by biowizz almost 8 years ago - 4 comments

#22 - Permission denied during collapse step

Issue - State: closed - Opened by AlexandraBomane almost 8 years ago - 5 comments

#21 - Contribution by class

Issue - State: closed - Opened by ramaniak about 8 years ago - 30 comments

#20 - problem with "seqcluster report" command

Issue - State: closed - Opened by AlexandraBomane over 8 years ago - 2 comments

#19 - problem with "Prepare samples" step

Issue - State: closed - Opened by AlexandraBomane over 8 years ago - 32 comments

#18 - miraligner Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 1

Issue - State: closed - Opened by hmkim over 8 years ago - 7 comments

#17 - Regarding of fastq quality by collapse

Issue - State: closed - Opened by hmkim over 8 years ago - 2 comments

#16 - report problem

Issue - State: closed - Opened by lpantano almost 9 years ago - 30 comments

#15 - metadata_fn in report picks up operating system artifacts

Issue - State: closed - Opened by ro6ert almost 9 years ago - 1 comment

#14 - IsomirDataSeqFromFiles error

Issue - State: closed - Opened by hmkim almost 9 years ago - 1 comment

#13 - Collapse

Issue - State: closed - Opened by filicado about 9 years ago - 2 comments

#12 - Support for mouse genome

Issue - State: closed - Opened by a113n over 9 years ago - 17 comments

#11 - NameError: global name 'gzip' is not defined

Issue - State: closed - Opened by sung over 9 years ago - 3 comments
Labels: bug

#10 - Add a Bitdeli Badge to README

Pull Request - State: closed - Opened by bitdeli-chef over 9 years ago

#9 - Add a Gitter chat badge to README.rst

Pull Request - State: open - Opened by gitter-badger almost 10 years ago - 2 comments

#8 - peaks figure in report

Issue - State: closed - Opened by lpantano almost 10 years ago
Labels: enhancement

#7 - html report

Issue - State: closed - Opened by lpantano about 10 years ago