Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / lotusbase/lotus.au.dk issues and pull requests

#118 - Bump debug and grunt-contrib-watch

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, javascript

#117 - Bump qs and grunt-contrib-watch

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#116 - Bump minimatch, grunt, grunt-contrib-jshint, grunt-contrib-watch and load-grunt-config

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, javascript

#115 - Bump addressable from 2.5.2 to 2.8.1

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, ruby

#114 - Bump grunt from 0.4.5 to 1.5.3

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies, javascript

#113 - Bump grunt from 0.4.5 to 1.5.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies, javascript

#112 - Bump ajv from 6.5.5 to 6.12.6

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies, javascript

#111 - Bump tar from 2.2.1 to 2.2.2

Pull Request - State: open - Opened by dependabot[bot] about 3 years ago
Labels: dependencies, javascript

#110 - Bump addressable from 2.5.2 to 2.8.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies, ruby

#109 - Bump phpmailer/phpmailer from 5.2.15 to 6.5.0

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, php

#108 - Bump hosted-git-info from 2.1.5 to 2.8.9

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, javascript

#107 - Bump grunt from 0.4.5 to 1.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies, javascript

#106 - Bump yargs-parser from 5.0.0 to 5.0.1

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, javascript

#105 - Bump phpseclib/phpseclib from 2.0.1 to 2.0.31

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, php

#104 - Bump y18n from 3.2.1 to 3.2.2

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, javascript

#103 - Bump bl from 1.1.2 to 1.2.3

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, javascript

#102 - Issue #100: Add high quality MG20 genome

Pull Request - State: closed - Opened by terrymun over 3 years ago

#101 - Bump ini from 1.3.4 to 1.3.7

Pull Request - State: open - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies, javascript

#99 - Issue #98: Add expression dataset from Montiel et al. 2020

Pull Request - State: closed - Opened by terrymun about 4 years ago

#98 - Add expression dataset from Montiel et al. 2020

Issue - State: closed - Opened by terrymun about 4 years ago
Labels: addition

#97 - Bump phpmailer/phpmailer from 5.2.15 to 6.1.6

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies, php

#96 - Allow additional user groups to be defined for ExpAt access

Pull Request - State: closed - Opened by terrymun over 4 years ago

#95 - Bump extend from 3.0.0 to 3.0.2

Pull Request - State: open - Opened by dependabot[bot] over 4 years ago
Labels: dependencies, javascript

#94 - Bump phpmailer/phpmailer from 5.2.15 to 5.2.27

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies, php

#93 - MySQL syntax error when querying for expression data

Issue - State: closed - Opened by terrymun over 5 years ago - 1 comment
Labels: bug

#92 - Allow additional user groups to be defined for ExpAt access

Issue - State: closed - Opened by terrymun over 5 years ago
Labels: addition

#91 - Issue #90: Fix LORE1 CSV export

Pull Request - State: closed - Opened by terrymun over 5 years ago

#90 - LORE1 search results CSV download is broken due to missing genome version

Issue - State: closed - Opened by terrymun over 5 years ago - 1 comment
Labels: bug

#89 - Lotus Base BLAST inaccessible

Issue - State: closed - Opened by terrymun almost 6 years ago
Labels: bug

#88 - New issue created via Lotus Base

Issue - State: closed - Opened by terrymun almost 6 years ago - 1 comment
Labels: invalid

#87 - Issue #86: Do not forcibly convert characters to UTF8

Pull Request - State: closed - Opened by terrymun almost 6 years ago

#86 - UTF8 characters not properly encoded when submitting LORE1 orders

Issue - State: closed - Opened by terrymun almost 6 years ago

#85 - Ensure that View module supports multiple genome assemblies

Issue - State: open - Opened by terrymun about 6 years ago

#84 - Issue #81: Add Gifu v1.1 gene models to Lotus Base

Pull Request - State: closed - Opened by terrymun about 6 years ago

#83 - Issue #82: Checking captcha and enforing login form validation

Pull Request - State: closed - Opened by terrymun about 6 years ago

#82 - Enforce captcha checking and validation on login form

Issue - State: closed - Opened by terrymun about 6 years ago

#81 - Add Gifu v1.1 gene models to Lotus Base

Issue - State: closed - Opened by terrymun about 6 years ago

#80 - Issue #77: Make Simon Kelly's RNAseq dataset public

Pull Request - State: closed - Opened by terrymun about 6 years ago

#79 - Issue #78: CSRF token not provided when download ExpAt dataset

Pull Request - State: closed - Opened by terrymun about 6 years ago

#78 - CSRF token not provided when download ExpAt dataset

Issue - State: closed - Opened by terrymun about 6 years ago
Labels: bug

#77 - Make Simon Kelly's RNAseq dataset public

Issue - State: closed - Opened by terrymun about 6 years ago
Labels: addition

#76 - Issue #75: Update PHP setcookie() calls to use secure and HTTP

Pull Request - State: closed - Opened by terrymun over 6 years ago

#75 - Update PHP setcookie() calls to use secure and HTTP

Issue - State: open - Opened by terrymun over 6 years ago

#74 - Issue #73: Create internal BLAST database for Vicia faba transcriptome

Pull Request - State: closed - Opened by terrymun over 6 years ago

#73 - Create internal BLAST database for Vicia faba transcriptome

Issue - State: closed - Opened by terrymun over 6 years ago
Labels: addition

#72 - Issue #70: Banners shouldn't be part of header

Pull Request - State: closed - Opened by terrymun over 6 years ago

#71 - Issue #69: Updating JBrowse tracks

Pull Request - State: closed - Opened by terrymun over 6 years ago

#70 - Banners shouldn't be part of header

Issue - State: closed - Opened by terrymun over 6 years ago
Labels: enhancement

#69 - Add Gifu methylation tracks to JBrowse

Issue - State: closed - Opened by terrymun over 6 years ago
Labels: addition

#68 - Issue #64: Group BLAST datasets exposed in SequenceServer

Pull Request - State: closed - Opened by terrymun over 6 years ago

#67 - Issue #63: Using ecotype-based groupings for BLAST databases

Pull Request - State: closed - Opened by terrymun over 6 years ago

#66 - Issue #65: Added metadata for new BLAST db (Lotus japonicus v1.0 genome)

Pull Request - State: closed - Opened by terrymun over 6 years ago

#65 - Add Lotus japonicus Gifu v1.0 genome to list of internally available BLAST databases

Issue - State: closed - Opened by terrymun over 6 years ago
Labels: addition

#64 - Group BLAST datasets exposed in SequenceServer

Issue - State: closed - Opened by terrymun over 6 years ago
Labels: enhancement

#63 - BLAST-related datasets dropdown should be grouped by accession

Issue - State: closed - Opened by terrymun over 6 years ago
Labels: enhancement

#62 - Implement GDPR-compliance

Issue - State: open - Opened by terrymun over 6 years ago
Labels: addition

#61 - Issue #60: Update GO annotations and InterPro to GO mappings

Pull Request - State: closed - Opened by terrymun over 6 years ago

#60 - Update GO annotations and InterPro to GO mappings

Issue - State: closed - Opened by terrymun over 6 years ago
Labels: addition

#59 - Issue #58: Fix XSS and CSRF vulnerability on registration page

Pull Request - State: closed - Opened by terrymun over 6 years ago

#58 - Fix XSS and CSRF vulnerability on registration page

Issue - State: closed - Opened by terrymun over 6 years ago
Labels: bug

#56 - Issue #53: Fixed syntax error that causes jQuery to err out

Pull Request - State: closed - Opened by terrymun over 6 years ago

#54 - TranscriptExplorer unable to search within a chromosomal position range

Issue - State: closed - Opened by terrymun over 6 years ago
Labels: bug

#53 - Fix jQuery issue with syntax error

Issue - State: closed - Opened by terrymun over 6 years ago
Labels: bug

#52 - Implement subresource integration checks for CDN-loaded resources

Issue - State: closed - Opened by terrymun over 6 years ago
Labels: enhancement

#51 - Lotus v3.0 annotations with extra codons

Issue - State: open - Opened by terrymun over 6 years ago - 4 comments

#50 - Issue #49: Add new RNAseq dataset (Simon Kelly's)

Pull Request - State: closed - Opened by terrymun almost 7 years ago

#49 - Add new RNAseq dataset (Simon Kelly's)

Issue - State: closed - Opened by terrymun almost 7 years ago

#47 - BLAST API not working when accessed via TrEx

Issue - State: closed - Opened by terrymun almost 7 years ago - 1 comment

#46 - BLAST API not working when accessed via SeqRet

Issue - State: closed - Opened by terrymun almost 7 years ago

#45 - Issue #16: Only load reCAPTCHA when user is not logged in

Pull Request - State: closed - Opened by terrymun almost 7 years ago

#44 - Issue #43: Fix potential CSRF vulnerabilities in all forms

Pull Request - State: closed - Opened by terrymun almost 7 years ago

#43 - Fix potential CSRF vulnerabilities in all forms

Issue - State: closed - Opened by terrymun almost 7 years ago

#42 - Issue #41: Using utf8_encode() when escaping user input

Pull Request - State: closed - Opened by terrymun almost 7 years ago

#40 - Display MD5 hashes of downloadable resources to allow users to check file integrity

Issue - State: closed - Opened by terrymun almost 7 years ago - 1 comment
Labels: addition

#39 - Issue #38: Fix issue where ComponentPath is not accessible to OAuth users

Pull Request - State: closed - Opened by terrymun almost 7 years ago

#38 - Fix issue where ComponentPath is not accessible to OAuth users

Issue - State: closed - Opened by terrymun almost 7 years ago

#37 - Issue #36: Fix execution after redirect (EAR) vulnerability

Pull Request - State: closed - Opened by terrymun almost 7 years ago

#36 - Fix execution after redirect (EAR) vulnerability

Issue - State: closed - Opened by terrymun almost 7 years ago

#35 - Issue #29: Fix CSRF vulnerability in forms

Pull Request - State: closed - Opened by terrymun almost 7 years ago

#34 - Issue #33: Fixed incorrect JWT secret reference in SequenceServer's router

Pull Request - State: closed - Opened by terrymun almost 7 years ago

#33 - Extended BLAST databases unavailable to authenticated users

Issue - State: closed - Opened by terrymun almost 7 years ago
Labels: bug

#32 - Issue 31: Fix issue where passthrough is enabled on all API routes

Pull Request - State: closed - Opened by terrymun almost 7 years ago

#31 - Fix issue where passthrough is enabled on all API routes

Issue - State: closed - Opened by terrymun almost 7 years ago - 1 comment
Labels: bug

#30 - Issue #28: Updated WHERE clause when counting shipping notifications

Pull Request - State: closed - Opened by terrymun almost 7 years ago

#29 - Fix CSRF vulnerability in forms

Issue - State: closed - Opened by terrymun almost 7 years ago
Labels: bug

#28 - Fix incorrect counts in Admin shipping notification

Issue - State: closed - Opened by terrymun almost 7 years ago
Labels: bug

#27 - Issue 26: Added user authentication for Admin API

Pull Request - State: closed - Opened by terrymun almost 7 years ago

#26 - Fix leaky admin API

Issue - State: closed - Opened by terrymun almost 7 years ago
Labels: bug

#25 - Use Mailchimp API for front page signup form to avoid CSRF attacks

Issue - State: closed - Opened by terrymun almost 7 years ago - 1 comment
Labels: enhancement

#23 - #21: Fixed potential possibility of SQL injection in API endpoint

Pull Request - State: closed - Opened by terrymun almost 7 years ago

#22 - Fix possible XSS vulnerability in legacy admin API

Issue - State: closed - Opened by terrymun almost 7 years ago
Labels: bug

#21 - Fix SQL injection vulnerabilities in API endpoint

Issue - State: closed - Opened by terrymun almost 7 years ago
Labels: bug

#20 - #19: Fixed remaining XSS vulnerability in LORE1 search form

Pull Request - State: closed - Opened by terrymun almost 7 years ago

#16 - Google ReCaptcha should only be initialized when required

Issue - State: closed - Opened by terrymun almost 7 years ago
Labels: bug