Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / looselab/readfish issues and pull requests

#282 - #

Issue - State: closed - Opened by alexomics over 1 year ago - 1 comment

#281 - read-until version is missing from docs

Issue - State: closed - Opened by satriobio over 1 year ago - 2 comments

#280 - CI QOL improvements

Issue - State: closed - Opened by Adoni5 over 1 year ago - 1 comment
Labels: epic

#279 - CI QOL update, including Publish package to PyPI on tag

Pull Request - State: closed - Opened by Adoni5 over 1 year ago

#278 - OSX Silicon install issue grpcio

Issue - State: closed - Opened by mattloose over 1 year ago - 2 comments
Labels: documentation

#277 - Pip version of readfish

Issue - State: closed - Opened by Adoni5 over 1 year ago - 2 comments
Labels: enhancement

#276 - FAQ questions to fix on release

Issue - State: closed - Opened by Adoni5 over 1 year ago - 3 comments
Labels: bug

#275 - VersionInfo class for readfish

Issue - State: open - Opened by Adoni5 over 1 year ago - 1 comment
Labels: enhancement

#274 - Github action for auto releasing to PyPI when release is made

Issue - State: closed - Opened by Adoni5 over 1 year ago - 1 comment
Labels: enhancement, epic

#273 - Documentation fixes

Issue - State: closed - Opened by Adoni5 over 1 year ago - 1 comment
Labels: enhancement, epic

#270 - Image does not display.

Issue - State: closed - Opened by mattloose over 1 year ago - 1 comment
Labels: bug

#269 - Fix link to built FAQ.md

Pull Request - State: closed - Opened by alexomics over 1 year ago

#268 - ReadMe Docs need to be updated with current images and performance metrics.

Issue - State: closed - Opened by mattloose over 1 year ago - 2 comments
Labels: documentation

#259 - Refactor rebased

Pull Request - State: closed - Opened by Adoni5 over 1 year ago

#258 - Future plan - write a mapper plugin for readfish that can share a reference library.

Issue - State: open - Opened by mattloose over 1 year ago - 3 comments
Labels: enhancement

#248 - Ask about simuliation without Minknow device

Issue - State: closed - Opened by ElroyLR over 1 year ago - 3 comments
Labels: Stale

#247 - Multiplex bulk fast5 simulation on Promethion

Issue - State: closed - Opened by lkwhite over 1 year ago - 6 comments

#237 - Issues bot

Issue - State: closed - Opened by Adoni5 almost 2 years ago - 1 comment

#236 - pre-commit

Issue - State: closed - Opened by Adoni5 almost 2 years ago - 2 comments

#234 - readfish 0.0.11a4 on MinION sequencing toml requires break_reads_after = 1.0

Issue - State: closed - Opened by rainwala almost 2 years ago - 10 comments
Labels: Stale

#221 - load config error

Issue - State: closed - Opened by nuriabonetm about 2 years ago - 28 comments

#204 - TLS error when running unblock-all

Issue - State: closed - Opened by melkramer over 2 years ago - 4 comments
Labels: Stale

#202 - A question on barcode-aware readfish

Issue - State: closed - Opened by hasindu2008 over 2 years ago - 16 comments
Labels: Stale

#201 - Readfish using guppy 6 and minknow 5 branch

Issue - State: closed - Opened by neavemj over 2 years ago - 8 comments
Labels: Stale

#196 - Test connections functionality

Issue - State: closed - Opened by Adoni5 almost 3 years ago - 2 comments
Labels: enhancement

#179 - Readfish targets TypeError

Issue - State: closed - Opened by mahreenkn almost 3 years ago - 11 comments
Labels: Stale

#178 - Generating run info

Issue - State: closed - Opened by alexomics almost 3 years ago
Labels: bug

#177 - dry run problems

Issue - State: closed - Opened by alexomics almost 3 years ago
Labels: bug

#174 - Issue for tracking issues

Issue - State: closed - Opened by alexomics almost 3 years ago - 2 comments
Labels: Stale

#172 - summarise_fq.py writes everything to stderr

Issue - State: closed - Opened by vshiv18 almost 3 years ago - 2 comments
Labels: Stale

#171 - toml update frequency and method

Issue - State: closed - Opened by mattloose about 3 years ago - 2 comments
Labels: Stale

#170 - Readfish with Guppy 6

Issue - State: closed - Opened by hasindu2008 about 3 years ago - 45 comments
Labels: Stale

#159 - Readfish sometimes go into a stuck state

Issue - State: closed - Opened by hasindu2008 over 3 years ago - 13 comments
Labels: Stale

#157 - Borked time issue

Issue - State: closed - Opened by mattloose over 3 years ago
Labels: bug

#151 - unblock-duration CLI param has wrong type

Issue - State: closed - Opened by alexomics over 3 years ago - 1 comment
Labels: bug

#139 - Bulk playback FAST5 file

Issue - State: closed - Opened by visanuwan almost 4 years ago - 10 comments
Labels: Stale

#137 - More nuanced handling of multiple mappings

Issue - State: closed - Opened by alexomics almost 4 years ago - 2 comments
Labels: Stale

#134 - Take mapping success criteria from binary mask

Issue - State: closed - Opened by Adoni5 about 4 years ago - 2 comments
Labels: enhancement

#128 - Using two reference files for two conditions on one flowcell

Issue - State: closed - Opened by petzel96 about 4 years ago - 3 comments
Labels: enhancement

#125 - readfish not rejecting reads but appears to be running

Issue - State: closed - Opened by danrdanny about 4 years ago - 6 comments
Labels: Stale

#124 - Installing 0.0.5a2 on GridION and avoiding bricking the system

Issue - State: closed - Opened by DrOllyGomez about 4 years ago - 9 comments
Labels: Stale

#123 - mapping time longer than 0.4 seconds

Issue - State: closed - Opened by WaxRain about 4 years ago - 3 comments
Labels: Stale

#121 - Whether readfish 0.0.5a2 implements in MinKNOW (minknow-core v4.1.2) 13/11/2020 released form ONT?

Issue - State: closed - Opened by HJTsai about 4 years ago - 3 comments
Labels: Stale

#119 - Update master

Pull Request - State: closed - Opened by alexomics about 4 years ago - 1 comment

#117 - Building DeepNano-Bliz on ARM (Jetson Xavier NX/AGX)

Issue - State: closed - Opened by sirselim about 4 years ago - 2 comments
Labels: Stale

#115 - contig not in MMI returns none

Issue - State: closed - Opened by alexomics over 4 years ago
Labels: bug

#112 - Messaging inconsistent - what is iteralign?

Issue - State: closed - Opened by mattloose over 4 years ago - 2 comments
Labels: Stale

#110 - invert readfish align

Issue - State: closed - Opened by mattloose over 4 years ago - 2 comments
Labels: Stale

#109 - Resolve crash when a run is ended.

Issue - State: closed - Opened by mattloose over 4 years ago - 4 comments
Labels: Stale

#105 - enable wait for run start

Issue - State: closed - Opened by mattloose over 4 years ago - 2 comments
Labels: Stale

#101 - Input files for centrifuge classification

Issue - State: closed - Opened by alexomics over 4 years ago - 1 comment
Labels: Stale

#100 - Move to read-until from PyPI

Issue - State: closed - Opened by alexomics over 4 years ago
Labels: enhancement

#98 - Bulk playback in minion-nc 20.06.5

Issue - State: closed - Opened by TomHarrop over 4 years ago - 11 comments
Labels: Stale

#96 - Bad Request

Issue - State: closed - Opened by lindsrowd over 4 years ago - 8 comments
Labels: Stale

#85 - Use ont_pyguppy_client_lib

Issue - State: closed - Opened by alexomics over 4 years ago - 1 comment
Labels: Stale

#82 - Sudden RU stop during barcoding experiment

Issue - State: closed - Opened by joanmarticarreras over 4 years ago - 4 comments
Labels: Stale

#78 - cannot see mapping speed

Issue - State: closed - Opened by 2387882242 over 4 years ago - 18 comments
Labels: question, Stale

#77 - Option to specify exceed max chunks behaviour

Issue - State: closed - Opened by mattloose over 4 years ago - 1 comment
Labels: enhancement

#74 - Logging message about target regions

Issue - State: closed - Opened by timmocking over 4 years ago - 3 comments
Labels: enhancement

#65 - 0 pores and no reads in simulation

Issue - State: closed - Opened by billytcl over 4 years ago - 5 comments
Labels: Stale

#64 - select_chr_21_22 did not work in readfish targets

Issue - State: closed - Opened by HJTsai over 4 years ago - 10 comments
Labels: Stale

#63 - MinKNOW not installed

Issue - State: closed - Opened by awjga over 4 years ago - 6 comments
Labels: Stale

#61 - API may not take case-sensitive storage path names into account

Issue - State: closed - Opened by ps-account over 4 years ago - 5 comments
Labels: Stale

#60 - Compatibility with MinKNOW-Core 4.04

Issue - State: closed - Opened by LynnLy over 4 years ago - 1 comment
Labels: enhancement

#59 - small target regions

Issue - State: closed - Opened by yusmiatiliau over 4 years ago - 2 comments
Labels: Stale

#58 - Specifying coordinates in TOML

Issue - State: open - Opened by kevbrick over 4 years ago - 12 comments
Labels: question, Stale

#57 - Applying to direct RNA seqeuencing

Issue - State: open - Opened by awjga over 4 years ago - 5 comments
Labels: Stale

#55 - Off-target region with high mapping reads

Issue - State: open - Opened by HJTsai over 4 years ago - 5 comments
Labels: Stale

#53 - Store logs as compressed files

Issue - State: open - Opened by mattloose over 4 years ago - 4 comments
Labels: enhancement

#39 - Setting up another guppy server

Issue - State: closed - Opened by alexomics almost 5 years ago - 5 comments
Labels: question

#37 - no_map reads seem mappable

Issue - State: open - Opened by ythuang0522 almost 5 years ago - 7 comments
Labels: question, Stale

#36 - Playback own fast5

Issue - State: closed - Opened by ythuang0522 almost 5 years ago - 13 comments

#35 - Choice of parameters

Issue - State: closed - Opened by JensUweUlrich almost 5 years ago - 4 comments
Labels: Stale

#32 - Best action on first connect to a run.

Issue - State: closed - Opened by mattloose almost 5 years ago - 1 comment
Labels: enhancement

#30 - setup help on minion

Issue - State: closed - Opened by brentp almost 5 years ago - 7 comments

#28 - Installing on GridION

Issue - State: closed - Opened by mattdmem almost 5 years ago - 16 comments
Labels: documentation, enhancement, question

#22 - Specifying targets in a bed file

Issue - State: closed - Opened by wdecoster almost 5 years ago - 13 comments
Labels: enhancement

#15 - basecalling refactor

Issue - State: closed - Opened by alexomics almost 5 years ago - 1 comment

#13 - Alert when no targets are provided

Issue - State: closed - Opened by alexomics about 5 years ago - 2 comments
Labels: bug

#10 - When client disconnects halt read_until program

Issue - State: closed - Opened by alexomics about 5 years ago
Labels: bug, enhancement

#8 - ru_generators

Issue - State: closed - Opened by mattloose about 5 years ago

#4 - Installation instructions

Issue - State: closed - Opened by alexomics about 5 years ago - 1 comment
Labels: documentation, enhancement

#3 - Read Until scripts should wait for the gRPC to be available before starting

Issue - State: closed - Opened by alexomics about 5 years ago - 1 comment
Labels: enhancement

#1 - Toml internal validation

Issue - State: closed - Opened by mattloose about 5 years ago - 3 comments
Labels: enhancement