Ecosyste.ms: Issues

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GitHub / loli/medpy issues and pull requests

#136 - Bump actions/download-artifact from 4.1.1 to 4.1.7 in /.github/workflows

Pull Request - State: open - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#135 - Updated release description

Pull Request - State: closed - Opened by loli 4 months ago

#134 - Release 0.5.2

Pull Request - State: closed - Opened by loli 4 months ago

#133 - There is a bug in assd solution

Issue - State: closed - Opened by Miraclerice 4 months ago - 3 comments

#132 - batchsize influence test performance

Issue - State: closed - Opened by pepperbubble 4 months ago - 2 comments

#131 - assd function crashes on different size arrays

Issue - State: closed - Opened by BarY7 8 months ago - 5 comments
Labels: bug

#130 - Release 0.5.1

Pull Request - State: closed - Opened by loli 8 months ago

#128 - Create python-publish.yml

Pull Request - State: closed - Opened by loli 10 months ago

#127 - Update build-test-gc.yml

Pull Request - State: closed - Opened by loli 10 months ago

#126 - Create build-test-gc.yml

Pull Request - State: closed - Opened by loli 10 months ago

#125 - Create build-test.yml

Pull Request - State: closed - Opened by loli 10 months ago

#124 - Added pre-commit action

Pull Request - State: closed - Opened by loli 10 months ago

#123 - Update binary.py

Pull Request - State: closed - Opened by ChekrounMohammed 11 months ago - 1 comment

#122 - Release 0.5.0

Pull Request - State: closed - Opened by loli 12 months ago

#121 - WIP: Use Numpy modules directly instead of SciPy aliases

Pull Request - State: closed - Opened by StellarStorm 12 months ago - 2 comments

#120 - Specify black line length is 88 characters

Pull Request - State: closed - Opened by StellarStorm 12 months ago - 1 comment

#119 - Black formatting & pre-commit hooks

Pull Request - State: closed - Opened by loli 12 months ago - 1 comment

#118 - Update texture.py

Pull Request - State: closed - Opened by harshamarupudi56 about 1 year ago - 1 comment

#117 - Update binary.py

Pull Request - State: closed - Opened by harshamarupudi56 about 1 year ago - 2 comments

#116 - Numpy.bool is deprecated

Issue - State: closed - Opened by captainjtx over 1 year ago - 7 comments

#115 - anisotropic_diffusion slicer error

Issue - State: closed - Opened by nbianka99 over 1 year ago - 3 comments

#114 - scipy deprecations

Issue - State: closed - Opened by raamana over 1 year ago - 1 comment

#113 - Update datatypes for Numpy 1.24

Pull Request - State: closed - Opened by StellarStorm almost 2 years ago - 3 comments

#112 - Stop using deprecated scipy namespaces

Pull Request - State: closed - Opened by nicolascedilnik about 2 years ago - 2 comments

#111 - Fixed dice coef. return value on emtpy sets

Pull Request - State: closed - Opened by loli about 2 years ago

#110 - Correct the calculation of assd and obj_assd

Pull Request - State: closed - Opened by Jingnan-Jia about 2 years ago - 2 comments

#109 - correct the calculation of assd and obj_assd

Pull Request - State: closed - Opened by Jingnan-Jia about 2 years ago

#108 - ASSD equation is wrong

Issue - State: closed - Opened by Jingnan-Jia about 2 years ago - 1 comment

#107 - Fix numpy slicing

Pull Request - State: closed - Opened by Erotemic over 2 years ago - 1 comment

#106 - Should Dice coefficient for empty result and empty reference be 1?

Issue - State: closed - Opened by baumgach over 2 years ago - 1 comment

#105 - digital-copyright

Pull Request - State: closed - Opened by JudeSafo over 2 years ago - 2 comments

#103 - Issue with graphcut support

Issue - State: closed - Opened by matthewdeancooper over 3 years ago - 8 comments
Labels: bug, documentation

#102 - reduce redundant computation when computing multiple surface distance-based metrics

Issue - State: closed - Opened by FabianIsensee over 3 years ago - 3 comments
Labels: enhancement

#101 - Problem with opening .img/.img.hdr file

Issue - State: closed - Opened by TheInfamousWayne over 3 years ago - 1 comment

#100 - Possible wrong result returned by medpy.io.load

Issue - State: closed - Opened by albertnew2012 over 3 years ago - 1 comment

#99 - No module named 'medpy.graphcut.maxflow'

Issue - State: closed - Opened by jeronimocabezuelo almost 4 years ago - 6 comments
Labels: documentation

#98 - No module named 'load'

Issue - State: closed - Opened by kolyadav over 4 years ago - 1 comment

#97 - Broken links and incomplete notebooks

Issue - State: closed - Opened by musman2012 over 4 years ago - 2 comments
Labels: documentation

#96 - Conda recipe with graphcut support

Issue - State: closed - Opened by PertuyF over 4 years ago - 2 comments

#95 - Handle few deprecations in scipy

Issue - State: closed - Opened by raamana over 4 years ago - 2 comments
Labels: enhancement

#94 - metrics for multi-classes?

Issue - State: closed - Opened by hubutui almost 5 years ago - 1 comment

#93 - Why I cannot load my CT volumns?

Issue - State: closed - Opened by FDSJK over 5 years ago

#92 - When I use medpy.io.load to read .nii files,it always wrong.

Issue - State: closed - Opened by Alagirl over 5 years ago - 1 comment

#90 - Anisotropic Diffusion Numpy Warning (+ solution ?)

Issue - State: closed - Opened by StenSipma over 5 years ago - 2 comments
Labels: python3 issue

#89 - test failed for graphcut.maxflow

Issue - State: closed - Opened by hubutui over 5 years ago - 8 comments
Labels: bug

#88 - Document loading images and masks for deep learning applications

Issue - State: closed - Opened by gkaissis over 5 years ago - 3 comments

#87 - ModuleNotFoundError: No module named 'medpy.graphcut.maxflow'

Issue - State: closed - Opened by varanasivenkatsai over 5 years ago - 4 comments

#86 - resample does not modify nifti header

Issue - State: closed - Opened by AndrewDDavis almost 6 years ago - 2 comments

#85 - medpy is NOT compatible with LATEST pydicom?

Issue - State: closed - Opened by jiapei100 almost 6 years ago - 4 comments
Labels: enhancement

#84 - Update docker images for other releases

Issue - State: closed - Opened by loli almost 6 years ago - 1 comment
Labels: documentation

#83 - Get rid of ez_setup.py bootstrap trick in setup.py

Issue - State: closed - Opened by loli almost 6 years ago - 1 comment
Labels: enhancement

#82 - Import Error: no module named 'filter'

Issue - State: closed - Opened by yxie060 almost 6 years ago - 2 comments

#81 - ImportError: No module named maxflow

Issue - State: closed - Opened by Halimeh-manaf almost 6 years ago - 11 comments

#80 - Move to simpleITK as image loader

Issue - State: closed - Opened by loli about 6 years ago - 1 comment
Labels: enhancement

#79 - Release 0.4.0

Pull Request - State: closed - Opened by loli about 6 years ago

#78 - Scipy 1.1.0 incompatibility _get_output in average_filter in image.py

Issue - State: closed - Opened by 01bui about 6 years ago - 3 comments
Labels: bug

#77 - ValueError on local_histogram

Issue - State: closed - Opened by pykao about 6 years ago - 4 comments
Labels: bug, python3 issue

#76 - Anisotropic Diffusion Behaviour

Issue - State: closed - Opened by loli about 6 years ago - 1 comment
Labels: bug, enhancement

#75 - one error in binary.py

Issue - State: closed - Opened by qianshuqinghan about 6 years ago - 1 comment

#74 - Fix typo

Pull Request - State: closed - Opened by blue-atom about 6 years ago - 1 comment

#73 - What is 'voxelspacing' ?

Issue - State: closed - Opened by aiosin over 6 years ago - 1 comment

#72 - TypeError with medpy.metric.binary

Issue - State: closed - Opened by anjany over 6 years ago - 2 comments

#71 - Added 95th percentile of Hausdorf Distance

Pull Request - State: closed - Opened by FabianIsensee over 6 years ago - 2 comments

#70 - Update binary.py

Pull Request - State: closed - Opened by VincentXWD over 6 years ago - 1 comment

#68 - Module has no attribute swig

Issue - State: closed - Opened by ysumath1 almost 7 years ago - 2 comments

#67 - Cut a release

Issue - State: closed - Opened by cancan101 almost 7 years ago - 10 comments

#66 - Python 3 issue: GLIBCXX not found

Issue - State: closed - Opened by jxchen01 almost 7 years ago - 9 comments
Labels: wontfix

#65 - MedPy GraphCut support broken for Mac / Home Brew users

Issue - State: closed - Opened by iamahern almost 7 years ago - 1 comment

#64 - Fix linker issues on MacOS

Pull Request - State: closed - Opened by iamahern almost 7 years ago - 2 comments

#63 - verbose pip install to see issues with building

Pull Request - State: closed - Opened by cancan101 about 7 years ago

#62 - update tests to work on python3

Pull Request - State: closed - Opened by cancan101 about 7 years ago

#61 - Allow Passing in Function to Anisotropic Diffusion Filtering

Issue - State: closed - Opened by cancan101 about 7 years ago - 2 comments
Labels: enhancement

#60 - support python3

Pull Request - State: closed - Opened by cancan101 about 7 years ago - 2 comments

#59 - run tests in ci

Pull Request - State: closed - Opened by cancan101 about 7 years ago - 4 comments

#58 - Use non sudo travis

Pull Request - State: closed - Opened by cancan101 about 7 years ago - 10 comments

#57 - misc cleanup in preparation for python3

Pull Request - State: closed - Opened by cancan101 about 7 years ago

#56 - 3D Patch extraction from 3D input

Issue - State: closed - Opened by saqibqamar about 7 years ago - 1 comment

#55 - Python 3 support in master

Issue - State: closed - Opened by cancan101 about 7 years ago - 10 comments
Labels: python3 issue

#54 - Automatic Conductance Parameter (kappa) for Anisotropic Diffusion Filtering

Issue - State: closed - Opened by cancan101 about 7 years ago - 4 comments
Labels: enhancement

#53 - allow voxelspacing to take numpy array

Pull Request - State: closed - Opened by cancan101 about 7 years ago

#52 - add Tukey's biweight function for anisotropic_diffusion

Pull Request - State: closed - Opened by cancan101 about 7 years ago - 2 comments

#51 - Add Tukey Biweight and Huber’s minimax norm to medpy.filter.smoothing.anisotropic_diffusion

Issue - State: closed - Opened by cancan101 about 7 years ago - 1 comment
Labels: enhancement

#50 - remove spaces from key in extras_require

Pull Request - State: closed - Opened by cancan101 about 7 years ago

#49 - Remove spaces in `extras_require`

Issue - State: closed - Opened by cancan101 about 7 years ago - 5 comments

#48 - Release 0.3.0

Pull Request - State: closed - Opened by loli about 7 years ago - 1 comment

#47 - itk 0.12.2 does not compile with vtk module

Issue - State: closed - Opened by loli about 7 years ago - 1 comment
Labels: bug

#46 - medpy_extract_sub_volume_by_example.py is not dimensionality free

Issue - State: closed - Opened by loli about 7 years ago - 1 comment
Labels: enhancement

#45 - extension file names in python3

Issue - State: closed - Opened by loli about 7 years ago - 1 comment
Labels: documentation

#44 - nosetests and python version in virtual environements

Issue - State: closed - Opened by loli about 7 years ago - 1 comment
Labels: enhancement

#43 - Fixgraphcut

Pull Request - State: closed - Opened by loli about 7 years ago

#42 - Make nibabel and pydicom default requirements

Issue - State: closed - Opened by loli about 7 years ago - 1 comment
Labels: enhancement

#41 - 'LazyITKModule' object has no attribute 'AnalyzeImageIO'

Issue - State: closed - Opened by JourneyWoo about 7 years ago - 2 comments

#40 - improved tests for histogram metrics

Pull Request - State: closed - Opened by raamana about 7 years ago - 1 comment

#39 - Clutter files

Issue - State: closed - Opened by loli about 7 years ago - 1 comment
Labels: bug

#38 - No __version__ and other auto tags in medpy package.

Issue - State: closed - Opened by loli about 7 years ago - 1 comment
Labels: enhancement

#37 - install_requires required order depends on setuptools-version

Issue - State: closed - Opened by loli about 7 years ago - 4 comments
Labels: bug, documentation

#36 - Python3 incompatibility in metric_/histogram.py test

Issue - State: closed - Opened by loli about 7 years ago - 2 comments
Labels: python3 issue