Ecosyste.ms: Issues

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GitHub / lnccbrown/HSSM issues and pull requests

#73 - Bumping Jax versions

Issue - State: closed - Opened by digicosmos86 over 1 year ago
Labels: bug

#72 - fix prior for sv to 0

Pull Request - State: closed - Opened by AlexanderFengler over 1 year ago

#70 - feat: updating code

Pull Request - State: closed - Opened by AisOmar over 1 year ago

#69 - Make initial set of tutorials

Issue - State: closed - Opened by AlexanderFengler over 1 year ago

#68 - Fixed jax function dimension issues

Pull Request - State: closed - Opened by digicosmos86 over 1 year ago

#66 - Incorporate bound checks during `Param` creation

Issue - State: closed - Opened by digicosmos86 over 1 year ago
Labels: enhancement

#65 - 60 add bounds separately from priors in the model

Pull Request - State: closed - Opened by AisOmar over 1 year ago

#64 - lanfactory integration with HSSM

Issue - State: closed - Opened by AisOmar over 1 year ago

#63 - 62 adding more flexible options for include dictionary

Pull Request - State: closed - Opened by AisOmar over 1 year ago

#62 - Adding more flexible options for include dictionary

Issue - State: closed - Opened by AisOmar over 1 year ago

#60 - Add bounds separately from priors in the model

Issue - State: closed - Opened by AisOmar over 1 year ago

#59 - Start writing documentation

Issue - State: closed - Opened by AisOmar over 1 year ago - 1 comment

#58 - Customizations for HSSM

Pull Request - State: closed - Opened by digicosmos86 over 1 year ago

#57 - Add a `graph()` method that outputs the correct graph for HSSM

Issue - State: closed - Opened by digicosmos86 over 1 year ago
Labels: enhancement

#55 - feat: adding unit test for hssm.py

Pull Request - State: closed - Opened by AisOmar over 1 year ago

#54 - Look into RL use case for HSSM class

Issue - State: closed - Opened by AisOmar over 1 year ago

#53 - summary and plotting functions

Issue - State: closed - Opened by AisOmar over 1 year ago - 2 comments
Labels: enhancement

#52 - Clarify on use cases of accessing pymc model using HSSM class

Issue - State: closed - Opened by AisOmar over 1 year ago

#51 - Add unit tests for base HSSM class

Issue - State: closed - Opened by AisOmar over 1 year ago

#50 - `sample` function

Issue - State: closed - Opened by digicosmos86 over 1 year ago
Labels: enhancement

#49 - Add `__repr__` and `__str__` functions

Issue - State: closed - Opened by digicosmos86 over 1 year ago
Labels: enhancement

#46 - 4. create sample function in a class

Issue - State: closed - Opened by AisOmar almost 2 years ago

#44 - 2. add model config parameters bounds

Issue - State: closed - Opened by AisOmar almost 2 years ago

#43 - 1. Move HSSM function to init.

Issue - State: closed - Opened by AisOmar almost 2 years ago

#42 - 30 new features the high level hssm class

Pull Request - State: closed - Opened by AisOmar almost 2 years ago

#41 - Updates to `hssm.wfpt`

Pull Request - State: closed - Opened by digicosmos86 almost 2 years ago - 3 comments

#39 - Test issue

Issue - State: closed - Opened by AisOmar almost 2 years ago

#38 - Make sure initvalue are floats

Issue - State: closed - Opened by AisOmar almost 2 years ago - 1 comment

#37 - Check the initvalue used in parameters bambi vs pymc

Issue - State: closed - Opened by AisOmar almost 2 years ago - 2 comments

#35 - More documentation in the Notebook

Issue - State: closed - Opened by AisOmar almost 2 years ago

#34 - [Minor] Some minor improvements

Issue - State: closed - Opened by digicosmos86 almost 2 years ago
Labels: enhancement

#33 - Update the factory function notebook for documentation

Pull Request - State: closed - Opened by digicosmos86 almost 2 years ago

#32 - [Documentation] Update notebooks after the base class bug is resolved

Issue - State: closed - Opened by digicosmos86 almost 2 years ago
Labels: bug, documentation

#31 - Use modules instead of classes to organize factory methods

Pull Request - State: closed - Opened by digicosmos86 almost 2 years ago

#30 - [New Features] The high-level HSSM class

Issue - State: closed - Opened by digicosmos86 almost 2 years ago - 2 comments
Labels: enhancement

#28 - Change log_pdf_sv data format to 2-column. Tests are updated as well

Pull Request - State: closed - Opened by digicosmos86 almost 2 years ago - 1 comment

#27 - [Minor] Update Github actions to update `setup-python` to v4 to support caching

Issue - State: closed - Opened by digicosmos86 almost 2 years ago - 1 comment
Labels: enhancement

#25 - [Bug] Make consistent the definition of a in the analytical and the LAN models

Issue - State: closed - Opened by digicosmos86 almost 2 years ago - 2 comments

#24 - [Minor] Update tests for WFPT base class

Issue - State: closed - Opened by digicosmos86 almost 2 years ago

#23 - feat: change aesara.tensor to pytensor.tensor

Pull Request - State: closed - Opened by AisOmar almost 2 years ago

#22 - Evaluation

Pull Request - State: closed - Opened by AisOmar almost 2 years ago

#21 - Pytensor

Pull Request - State: closed - Opened by AisOmar almost 2 years ago

#20 - Lan onnx update

Pull Request - State: closed - Opened by AisOmar almost 2 years ago

#19 - Add data transformation step before fitting data into log likelihood function

Issue - State: closed - Opened by AisOmar almost 2 years ago - 1 comment

#18 - Unit testing for LAN (jax and aesara)

Issue - State: closed - Opened by AisOmar almost 2 years ago

#17 - Using `WFPT` factory class to produce arbitrary `pm.Distribution`s, including LAN classes

Pull Request - State: closed - Opened by digicosmos86 almost 2 years ago - 1 comment

#16 - [New Features] Summary statistics and graphing

Issue - State: closed - Opened by digicosmos86 almost 2 years ago - 1 comment

#15 - [Miscellaneous] Speed test between aesara wrapped jax vs. pure aesara sampling

Issue - State: closed - Opened by digicosmos86 almost 2 years ago - 2 comments

#14 - [Miscellaneous] Check why sampling get stuck with pymc >= 4.2.2

Issue - State: closed - Opened by digicosmos86 almost 2 years ago - 1 comment

#13 - [Bug fix] logpdf_sv

Issue - State: closed - Opened by digicosmos86 almost 2 years ago - 1 comment

#12 - Restored decision func

Pull Request - State: closed - Opened by digicosmos86 about 2 years ago

#11 - [Minor] Restore decision func

Issue - State: closed - Opened by digicosmos86 about 2 years ago

#10 - [Minor] Restructure the repo

Issue - State: closed - Opened by digicosmos86 about 2 years ago

#9 - Add tests for WFPT Distribution for PYMC version >=4.0.0

Issue - State: closed - Opened by AisOmar about 2 years ago

#8 - Create a Hierarchical Model

Issue - State: closed - Opened by AisOmar about 2 years ago

#7 - Add wfpt tests

Pull Request - State: closed - Opened by AisOmar about 2 years ago - 2 comments

#6 - First implementation of the WFPT distribution

Pull Request - State: closed - Opened by digicosmos86 about 2 years ago

#3 - Separately implement WFPT distribution

Issue - State: closed - Opened by digicosmos86 about 2 years ago

#2 - Added CI/CD, installed pre-commit hooks, and added some dependencies

Pull Request - State: closed - Opened by digicosmos86 about 2 years ago

#1 - Poetry add

Pull Request - State: closed - Opened by AisOmar about 2 years ago