Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / lnccbrown/HSSM issues and pull requests

#600 - 596 add code coverage

Pull Request - State: open - Opened by cpaniaguam 20 days ago

#599 - Added functionalities to save and load models

Pull Request - State: open - Opened by digicosmos86 21 days ago - 1 comment

#598 - Plot improvements

Pull Request - State: open - Opened by AlexanderFengler 26 days ago - 1 comment

#596 - Add code coverage

Issue - State: open - Opened by cpaniaguam 28 days ago - 2 comments

#595 - fix: suppress buggy output from pytensor.function

Pull Request - State: closed - Opened by cpaniaguam about 1 month ago - 1 comment
Labels: bug, enhancement

#594 - Suppress annomalous output in pytensor.function

Issue - State: closed - Opened by cpaniaguam about 1 month ago - 1 comment

#590 - [Refactor] How parameters are represented in HSSM

Pull Request - State: closed - Opened by digicosmos86 about 2 months ago

#585 - 578 improve analytical likelihood

Pull Request - State: closed - Opened by cpaniaguam 2 months ago
Labels: enhancement

#583 - Revert changes to analytical likelihood function

Pull Request - State: closed - Opened by digicosmos86 2 months ago

#581 - Revert to old analytical likelihood for ddm

Issue - State: closed - Opened by AlexanderFengler 2 months ago

#579 - Added UserParam class for user parameter specification

Pull Request - State: closed - Opened by digicosmos86 3 months ago - 2 comments

#578 - Try the Stan implementation of the DDM analytical likelihood

Issue - State: closed - Opened by digicosmos86 3 months ago - 2 comments

#577 - add working log likelihood computation to hssm class

Pull Request - State: closed - Opened by AlexanderFengler 3 months ago

#576 - Fixed error of parent parameter specification

Pull Request - State: closed - Opened by digicosmos86 3 months ago - 1 comment

#575 - Release v0.2.4

Pull Request - State: closed - Opened by digicosmos86 3 months ago - 3 comments

#574 - Release v0.2.4

Issue - State: closed - Opened by digicosmos86 3 months ago

#572 - Added `HSSM.restore_traces()` method

Pull Request - State: closed - Opened by digicosmos86 3 months ago - 1 comment

#568 - Fix float32 vs float64 issue

Pull Request - State: closed - Opened by digicosmos86 3 months ago

#567 - Minor bug fixes

Pull Request - State: closed - Opened by digicosmos86 3 months ago

#566 - Quick fix for "parent" parameters

Issue - State: closed - Opened by digicosmos86 3 months ago - 1 comment
Labels: bug

#564 - [Refactor] `UserParam` class only for user class specification

Issue - State: closed - Opened by digicosmos86 3 months ago
Labels: enhancement, refactor

#563 - [Refactor] `ParentParamDef` mixin

Issue - State: closed - Opened by digicosmos86 3 months ago
Labels: enhancement, refactor

#562 - [Refactor] `RegressionParam` class

Issue - State: closed - Opened by digicosmos86 3 months ago
Labels: enhancement, refactor

#561 - [Refactor] `SimpleParam` class

Issue - State: closed - Opened by digicosmos86 3 months ago
Labels: enhancement, refactor

#560 - [Refactor] `Param` class, which is a base class for `SimpleParam` and `RegressionParam` class

Issue - State: closed - Opened by digicosmos86 3 months ago
Labels: enhancement, refactor

#559 - [Refactor] `Params` class, which wraps around a dictionary and stores all `Param` information

Issue - State: closed - Opened by digicosmos86 3 months ago
Labels: enhancement, refactor

#554 - Refactor test functions with parametrization

Pull Request - State: closed - Opened by cpaniaguam 3 months ago - 3 comments

#552 - Refactor test_bbox function to use parameterized tests

Pull Request - State: closed - Opened by cpaniaguam 3 months ago

#550 - Update test likelihoods

Pull Request - State: closed - Opened by cpaniaguam 3 months ago

#547 - Fix initval setters leading to NotImplementedError

Pull Request - State: closed - Opened by AlexanderFengler 3 months ago

#545 - 537 initial vi support and tutorial

Pull Request - State: closed - Opened by AlexanderFengler 3 months ago

#541 - Question regarding parameters in hierarchical model

Issue - State: closed - Opened by SaschaFroelich 3 months ago - 2 comments

#538 - Omitted variable inference after HSSM update

Issue - State: closed - Opened by SaschaFroelich 3 months ago - 7 comments

#537 - Initial vi-support and tutorial

Issue - State: closed - Opened by AlexanderFengler 3 months ago

#534 - Bambi fix shape issues

Pull Request - State: closed - Opened by AlexanderFengler 4 months ago - 1 comment

#533 - Model does not consider initial values?

Issue - State: closed - Opened by SaschaFroelich 4 months ago - 5 comments

#528 - Drift rate parameter 'v' not estimated properly

Issue - State: closed - Opened by Lipika-T 4 months ago - 3 comments

#526 - ssms.basic_simulators.simulator is unstable

Issue - State: closed - Opened by Hellobamboobamboo 4 months ago - 1 comment

#524 - arviz doesn't work or other problems?

Issue - State: closed - Opened by Hellobamboobamboo 4 months ago - 1 comment

#522 - Fix InferenceData

Pull Request - State: closed - Opened by digicosmos86 4 months ago

#521 - Fix graphing

Pull Request - State: closed - Opened by digicosmos86 4 months ago

#520 - Fix sampler specification

Pull Request - State: closed - Opened by digicosmos86 4 months ago

#519 - Fix plotting

Pull Request - State: closed - Opened by digicosmos86 4 months ago

#518 - Fix posterior predictive sampling

Pull Request - State: closed - Opened by digicosmos86 4 months ago

#517 - Fix aliasing for bambi

Pull Request - State: closed - Opened by digicosmos86 4 months ago - 2 comments

#516 - Fix compatibility with Bambi

Pull Request - State: closed - Opened by digicosmos86 4 months ago

#515 - Fix compatibility of graphing with PyMC 5.16.2

Issue - State: closed - Opened by digicosmos86 4 months ago - 1 comment
Labels: bug, wontfix, upstream

#513 - Fix categorical variables bug

Pull Request - State: closed - Opened by AlexanderFengler 4 months ago

#512 - Cannot use specific parameter title for custom model config

Issue - State: open - Opened by AndrewZhang599 4 months ago - 3 comments

#511 - Dimensionality of data and RV don't match in custom model

Issue - State: closed - Opened by AndrewZhang599 4 months ago - 1 comment

#509 - Fixing `v` to prior leads to error.

Issue - State: closed - Opened by AlexanderFengler 4 months ago
Labels: bug

#507 - Fix validation and remove unnecessary assert statements

Pull Request - State: closed - Opened by cpaniaguam 4 months ago
Labels: enhancement

#506 - refactor: use fstring in error message

Pull Request - State: closed - Opened by cpaniaguam 4 months ago

#505 - Fix Param.update and add test case

Pull Request - State: closed - Opened by cpaniaguam 4 months ago
Labels: bug

#504 - Use template for Param.__repr__

Issue - State: closed - Opened by cpaniaguam 4 months ago - 5 comments

#503 - Raise ValueError instead of assert

Issue - State: closed - Opened by cpaniaguam 4 months ago - 1 comment
Labels: enhancement

#502 - Make override_default_priors_x docstrings dynamic with template

Issue - State: closed - Opened by cpaniaguam 4 months ago - 1 comment

#501 - Refactor message to fstring

Issue - State: closed - Opened by cpaniaguam 4 months ago - 1 comment

#500 - Decide if doing nothing before check?

Issue - State: closed - Opened by cpaniaguam 4 months ago - 3 comments

#499 - `self` missing in `hasattr`check in Param.update

Issue - State: closed - Opened by cpaniaguam 4 months ago - 1 comment
Labels: bug, enhancement

#498 - Different coordinates for some parameters in the inference data

Issue - State: open - Opened by hyang336 4 months ago - 1 comment
Labels: bug, upstream

#496 - error importing hssm

Issue - State: closed - Opened by sallidina 4 months ago - 6 comments

#492 - Refactor `Param` class

Issue - State: closed - Opened by digicosmos86 4 months ago - 1 comment
Labels: enhancement, refactor

#491 - Fix graphing after bambi 0.14 is released

Issue - State: closed - Opened by digicosmos86 4 months ago - 3 comments

#490 - Refactor for bambi 0.14

Issue - State: closed - Opened by digicosmos86 4 months ago

#488 - Workshop tutorial

Pull Request - State: closed - Opened by AlexanderFengler 4 months ago

#485 - Reconciliate re-sampling behavior

Pull Request - State: closed - Opened by digicosmos86 4 months ago

#484 - Fix compatibility with PyMC>=5.16

Pull Request - State: closed - Opened by digicosmos86 4 months ago

#482 - tutorial on saving and loading

Issue - State: open - Opened by AlexanderFengler 5 months ago

#481 - Reconciliate re-sampling behavior

Issue - State: closed - Opened by digicosmos86 5 months ago

#479 - Allow PyMC >= 5.15

Issue - State: closed - Opened by AlexanderFengler 5 months ago - 1 comment

#478 - fix bug where resampling doesnt update the traces argument

Pull Request - State: closed - Opened by AlexanderFengler 5 months ago - 1 comment

#471 - hierarchical DDM does not seem to converge at all on 0.2.2

Issue - State: closed - Opened by hyang336 5 months ago - 33 comments

#469 - hssm is not installable on windows (cpu only)

Issue - State: closed - Opened by yufeng-tian 5 months ago - 1 comment

#468 - Fix nan gradients in analytical likelihood

Pull Request - State: closed - Opened by digicosmos86 5 months ago - 12 comments

#467 - put in prep paper up front in readme

Pull Request - State: closed - Opened by AlexanderFengler 5 months ago - 1 comment

#466 - readme needs to include in-prep citation

Issue - State: closed - Opened by AlexanderFengler 5 months ago

#463 - 0.2.2 might have broken the race _4 model

Issue - State: closed - Opened by hyang336 5 months ago - 1 comment