Ecosyste.ms: Issues

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GitHub / lmcinnes/umap issues and pull requests

#933 - Avoid calling should_pickle on models

Pull Request - State: open - Opened by jonathan-conder-sm about 2 years ago

#930 - Questions about layouts.py

Issue - State: closed - Opened by Fzx-oss about 2 years ago - 2 comments

#929 - Update deprecated matplotlib colormap registry

Pull Request - State: closed - Opened by yannikschaelte about 2 years ago - 1 comment

#928 - Handle complex solutions for the Dirichlet distance.

Issue - State: open - Opened by oiao about 2 years ago - 1 comment

#927 - ignore force approximation with precomputed knn

Pull Request - State: closed - Opened by jlmelville about 2 years ago - 1 comment

#926 - UMAP based on correlation matrix

Issue - State: closed - Opened by bigsuicideparty about 2 years ago - 3 comments

#925 - Minibatch training for parametric umap

Issue - State: open - Opened by theahura about 2 years ago - 1 comment

#924 - new spectral initialization option: a truncated SVD-warmed lobpcg

Pull Request - State: closed - Opened by jlmelville about 2 years ago - 1 comment

#922 - [TYPO] Update precomputed_k-nn.rst

Pull Request - State: closed - Opened by cakiki about 2 years ago

#917 - Assigning weights to input datasets

Issue - State: closed - Opened by Prithwijit-Chak about 2 years ago

#915 - Update LICENSE.txt

Pull Request - State: closed - Opened by GeorgeKontsevik about 2 years ago

#900 - can't install umap-learn in python 3.10.2

Issue - State: open - Opened by vmgustavo about 2 years ago - 4 comments

#893 - Plotting background stuck as black

Issue - State: open - Opened by jonahpearl over 2 years ago

#892 - Reproducibility depends on `n_neighbors`

Issue - State: open - Opened by dericdesta over 2 years ago - 3 comments

#867 - parametric umap fails to save model

Issue - State: open - Opened by niederle over 2 years ago - 5 comments

#863 - fix relations_dictionary problems which prevents from correctly updating aligned_umap

Pull Request - State: closed - Opened by hndgzkn over 2 years ago - 4 comments

#862 - LoweringError: Failed in nopython mode pipeline (step: native lowering)

Issue - State: open - Opened by sofiavaldez77 over 2 years ago - 4 comments

#854 - KeyError using metric='precomputed'

Issue - State: open - Opened by groceryheist over 2 years ago - 1 comment

#844 - Unknown import issue

Issue - State: open - Opened by chenxinye over 2 years ago - 1 comment

#834 - Transforming new data with fitted embedder not supported for densMAP

Issue - State: open - Opened by JaKluge almost 3 years ago - 2 comments

#828 - module 'umap' has no attribute 'UMAP'

Issue - State: open - Opened by renzha-miun almost 3 years ago - 11 comments

#822 - Add Mutual-NN Description

Pull Request - State: closed - Opened by adalmia96 almost 3 years ago - 3 comments

#821 - Test failure in test_save_load with tensorflow 2.7: Unknown loss function: loss.

Issue - State: open - Opened by Mic92 almost 3 years ago - 4 comments

#810 - UMAP Intersections and unions are broken

Issue - State: closed - Opened by rhysnewell almost 3 years ago - 5 comments

#790 - update function of UMAP does not work

Issue - State: open - Opened by Ben-Epstein about 3 years ago - 7 comments

#775 - Results of umap-learn and UMAP by cuML are different

Issue - State: open - Opened by JYWangGeneCosmo about 3 years ago - 7 comments

#771 - Stuck at constructing embedding?

Issue - State: closed - Opened by ginward about 3 years ago - 24 comments

#763 - How can we track the progress of UMAP for large data-set

Issue - State: open - Opened by pratikchhapolika about 3 years ago - 5 comments

#747 - UMAP Segmentation Faults

Issue - State: open - Opened by rhysnewell over 3 years ago - 28 comments

#732 - UMAP reduces 10 PCs into 2 dimensional summary data?

Issue - State: closed - Opened by jielab over 3 years ago - 11 comments

#715 - umap from within docker

Issue - State: closed - Opened by chasemc over 3 years ago - 4 comments

#702 - LLVM ERROR: Symbol not found: __svml_sqrtf8

Issue - State: open - Opened by patskowron over 3 years ago - 6 comments

#672 - Can't pickle AlignedUMAP

Issue - State: open - Opened by agombert over 3 years ago - 4 comments

#601 - Weights when combining multiple UMAP models

Issue - State: open - Opened by candalfigomoro over 3 years ago - 2 comments

#580 - [RFC] Feature: ParametricUMAP PyTorch implementation

Issue - State: open - Opened by leriomaggio almost 4 years ago - 24 comments

#552 - Possible memory leak?

Issue - State: closed - Opened by aalloul almost 4 years ago - 3 comments

#535 - UMAP eating up memory

Issue - State: open - Opened by hsamulowitz almost 4 years ago - 11 comments

#480 - umap.plot got the legend blocking some data points

Issue - State: open - Opened by jfredfan about 4 years ago - 4 comments

#466 - UMAP produces different results with the same parameters for a loop

Issue - State: open - Opened by xuzhendong2016 over 4 years ago - 2 comments

#461 - ValueError in transform method after fitting on > 4095 samples

Issue - State: open - Opened by AlexandreAbreu8 over 4 years ago - 9 comments

#432 - embedding constraints

Issue - State: open - Opened by dribnet over 4 years ago - 5 comments
Labels: new feature

#428 - Passing distance matrix in metric="precomputed", what about the data?!

Issue - State: open - Opened by NimaSarajpoor over 4 years ago - 2 comments

#416 - Crash when running with larger dataset

Issue - State: open - Opened by DicksonK over 4 years ago - 13 comments

#408 - inverse_transform doesn't work on 1D data

Issue - State: open - Opened by schwanne over 4 years ago - 2 comments

#365 - Problem with import umap.plot

Issue - State: closed - Opened by AnastasiiaKabeshova over 4 years ago - 9 comments

#356 - How can we apply the Gower metric to UMAP?

Issue - State: open - Opened by simeng-yang almost 5 years ago - 10 comments

#327 - convert dists earlier in transform (fix for #324)

Pull Request - State: closed - Opened by aparrish almost 5 years ago - 3 comments

#298 - Document reproducibility guarantees

Issue - State: open - Opened by tomwhite about 5 years ago - 16 comments
Labels: documentation, good first issue, 0.4

#273 - Serializing UMAP

Issue - State: open - Opened by martinobertoni over 5 years ago - 7 comments
Labels: Good Reads

#219 - transform() speed for online outlier detection

Issue - State: open - Opened by Timonzimm over 5 years ago - 6 comments

#190 - ValueError: Precomputed metric requires shape (n_queries, n_indexed)

Issue - State: open - Opened by jolespin almost 6 years ago - 5 comments

#182 - Systematically determine `min_dist` and `n_neighbors`

Issue - State: open - Opened by NTNguyen13 almost 6 years ago - 12 comments
Labels: Good Reads

#178 - Save and load a model with UMAP

Issue - State: closed - Opened by ghost almost 6 years ago - 12 comments

#153 - Random_state produces different results on different operating systems

Issue - State: open - Opened by iicky about 6 years ago - 8 comments

#152 - Is there a way to save, and restore a particular umap embedding?

Issue - State: closed - Opened by greyowl about 6 years ago - 4 comments

#148 - How to prevent overfitting in supervised mode?

Issue - State: open - Opened by miclegr about 6 years ago - 8 comments

#122 - How does UMAP estimates/evaluates variance?

Issue - State: closed - Opened by cartal over 6 years ago - 7 comments

#115 - What would be the best distance metric for missing data?

Issue - State: closed - Opened by ensonario over 6 years ago - 8 comments

#81 - Error in transform()

Issue - State: closed - Opened by dawe over 6 years ago - 3 comments

#62 - Partial fit / Incremental UMAP

Issue - State: open - Opened by parashardhapola over 6 years ago - 31 comments
Labels: new feature

#61 - Does UMAP accept a distance matrix as custom metric?

Issue - State: closed - Opened by VisuMap over 6 years ago - 10 comments

#59 - Support for input neighbor sets

Issue - State: closed - Opened by lmcinnes over 6 years ago - 2 comments
Labels: enhancement

#58 - Mixed-type datasets

Issue - State: open - Opened by amir-ghasemi over 6 years ago - 31 comments

#6 - Evaluating dimensionality reduction?

Issue - State: open - Opened by DataWaveAnalytics about 7 years ago - 14 comments
Labels: Good Reads