Ecosyste.ms: Issues

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GitHub / lmcinnes/umap issues and pull requests

#1034 - stuck on “ import umap.umap_ as umap”，no error but stuck at there

Issue - State: open - Opened by lilishian about 1 year ago - 4 comments

#1032 - ValueError: cannot assign slice from input of different size

Issue - State: open - Opened by roablep about 1 year ago - 7 comments

#1031 - Fix unit tests

Pull Request - State: closed - Opened by hamelin about 1 year ago - 3 comments

#1030 - Disabling logging progress of batches for transform

Issue - State: open - Opened by Eichhof about 1 year ago - 1 comment

#1029 - Use of eigsh vs lobpcg in spectral_layout method

Issue - State: open - Opened by vytnav about 1 year ago

#1028 - Supervising training then unlabelled test data problem

Issue - State: open - Opened by carluqcor about 1 year ago

#1026 - UMAP exit with no error

Issue - State: open - Opened by SnailTyan about 1 year ago - 1 comment

#1025 - Interpolation in data space vs embedding space

Issue - State: open - Opened by anthony-mendil about 1 year ago - 1 comment

#1021 - Random state doesn't work with metric='precomputed'

Issue - State: open - Opened by Odessit007 over 1 year ago - 2 comments

#1020 - Multiple GPUs - TF

Issue - State: open - Opened by gg4u over 1 year ago

#1019 - Fix docstring formatting of init parameter of UMAP class

Pull Request - State: closed - Opened by felixdivo over 1 year ago - 2 comments

#1018 - Found array with dim 3. Estimator expected <= 2

Issue - State: open - Opened by Luoxiaoyu828 over 1 year ago

#1017 - Using graph edge list as input?

Issue - State: open - Opened by void4 over 1 year ago

#1016 - Update README.rst

Pull Request - State: closed - Opened by dsblank over 1 year ago - 1 comment

#1015 - Jaccard transformation function clarification

Issue - State: open - Opened by Rridley7 over 1 year ago - 1 comment

#1014 - Docs | Add missing space in precomputed_k-nn.rst

Pull Request - State: closed - Opened by Odessit007 over 1 year ago - 2 comments

#1013 - Docs | Fix typo in supervised.rst

Pull Request - State: closed - Opened by Odessit007 over 1 year ago - 1 comment

#1012 - precomputed_knn error

Issue - State: open - Opened by blabarthe1 over 1 year ago - 2 comments

#1011 - Bokeh Plotting import

Issue - State: closed - Opened by DragosPet over 1 year ago - 3 comments

#1010 - fix: fix numpy.int and numpy.float deprecation to be compatible with numpy >= 1.20.0

Pull Request - State: closed - Opened by TTTPOB over 1 year ago - 1 comment

#1009 - Using UMAP for positive correlation

Issue - State: closed - Opened by Rridley7 over 1 year ago - 3 comments

#1008 - ValueError: cannot assign slice from input of different size

Issue - State: open - Opened by Jiawei-Xing over 1 year ago - 8 comments

#1007 - Latest umap-learn 0.5.3 is not compatible with latest numpy 1.24.3

Issue - State: open - Opened by orenbenkiki over 1 year ago - 1 comment

#1006 - numba error when running compute_visualization() with method=umap

Issue - State: closed - Opened by NevilleMthw over 1 year ago - 7 comments

#1005 - Question: Is it possible to UMAP without data?

Issue - State: open - Opened by youssefabdelm over 1 year ago - 2 comments

#1004 - `numba` 0.57.0 raises `NumbaDeprecationWarning` regarding `'nopython'` kwarg

Issue - State: closed - Opened by dpoznik over 1 year ago - 6 comments

#1002 - Issue warning if setting n_jobs and random_state

Pull Request - State: closed - Opened by crypdick over 1 year ago - 1 comment

#1001 - Issue warning that setting seed limits parallelism

Issue - State: closed - Opened by crypdick over 1 year ago - 1 comment

#1000 - Changes in Layouts , Addition of new files

Pull Request - State: open - Opened by Sakshi-2797 over 1 year ago - 1 comment

#997 - The process exited without prompting any errors

Issue - State: open - Opened by DYH-Devil over 1 year ago

#996 - KeyError when using metric="precomputed"

Issue - State: open - Opened by lkp411 over 1 year ago - 1 comment

#995 - How to do negative labelling?

Issue - State: closed - Opened by yamada321 over 1 year ago - 5 comments

#994 - cannot set init parameter to pca

Issue - State: open - Opened by mayuris25 over 1 year ago - 3 comments

#993 - Changes in Spectral Layout

Pull Request - State: open - Opened by Sakshi-2797 over 1 year ago - 2 comments

#992 - docs : Fix formatting in UMAP class documentation

Pull Request - State: closed - Opened by Hamza-nabil over 1 year ago

#991 - Formatting error in `UMAP` class doctoring

Issue - State: open - Opened by PierreGtch over 1 year ago

#989 - How to use precomputed_knn in a GridsearchCV pipeline

Issue - State: closed - Opened by notuntoward over 1 year ago - 2 comments

#988 - nndescent not found in umap

Issue - State: open - Opened by Yongxin1120 over 1 year ago

#987 - Return intermediate embeddings

Issue - State: closed - Opened by PierreGtch over 1 year ago - 2 comments

#986 - How should missing values be handled for Jaccard metric?

Issue - State: open - Opened by StaffanBetner over 1 year ago - 2 comments

#985 - one dimensional data: Should an error be raised?

Issue - State: open - Opened by enryH over 1 year ago

#984 - Aligned UMAP: clarification on 'overlapping' points through time?

Issue - State: open - Opened by drscotthawley over 1 year ago - 2 comments

#983 - docs: minor typos fix

Pull Request - State: closed - Opened by 0xTiger over 1 year ago

#982 - Productionalizing UMAP Embedded points for new data

Issue - State: open - Opened by iterakhtaras over 1 year ago

#981 - installing [plot] yield assertion error

Issue - State: open - Opened by gg4u over 1 year ago - 1 comment

#980 - Parametric UMAP Model Broken on Latest Tensorflow Platform?

Issue - State: open - Opened by ayaanhossain over 1 year ago - 2 comments

#978 - New Release

Issue - State: closed - Opened by mjmucha over 1 year ago - 4 comments

#977 - Allow UMAP to accept data with nan or inf values

Pull Request - State: closed - Opened by SamKlier over 1 year ago - 2 comments

#976 - Cannot install on Python 3.11.2

Issue - State: open - Opened by rdrainville over 1 year ago - 3 comments

#974 - Transfer learning in UMAP?

Issue - State: open - Opened by dewball345 over 1 year ago - 5 comments

#973 - Update densmap_demo.rst

Pull Request - State: closed - Opened by aizardar over 1 year ago - 1 comment

#970 - install fails with recent numpy and numba versions (requires numpy<1.24)

Issue - State: closed - Opened by vdet over 1 year ago - 3 comments

#969 - UMAP Resistance to Scale Changes, Data Drift

Issue - State: open - Opened by dewball345 over 1 year ago - 7 comments

#968 - Why doesn't UMAP map similar data to same region in learned latent space?

Issue - State: closed - Opened by cdtennant over 1 year ago - 3 comments

#965 - AlignedUMAP bug or untuitive result

Issue - State: open - Opened by mglowacki100 over 1 year ago

#962 - Test failures with sklearn 1.2.0+

Issue - State: closed - Opened by mweinelt over 1 year ago

#961 - UMAP on artwork

Issue - State: open - Opened by S113355 over 1 year ago - 1 comment

#960 - AlignedUMAP: transform new observations

Issue - State: open - Opened by spadarian over 1 year ago - 2 comments
Labels: new feature

#959 - AssertionError: 29 mean_match_candidates > data_subset

Issue - State: closed - Opened by Dyn-Walker over 1 year ago - 1 comment

#958 - Aligned umap issues

Pull Request - State: closed - Opened by GregDemand over 1 year ago

#954 - UMAP on 4-dimensional line data

Issue - State: open - Opened by sudhir-akridata over 1 year ago - 1 comment

#952 - Anticipate stricter asarray handling in numpy

Pull Request - State: closed - Opened by lmcinnes over 1 year ago

#950 - Reproducibility of results with transform method

Issue - State: open - Opened by angionir over 1 year ago - 2 comments

#949 - System Error ? - Installed via pip.. tried downgrade numpy, no success

Issue - State: closed - Opened by gg4u over 1 year ago - 1 comment

#948 - Minor performance improvements

Pull Request - State: closed - Opened by rohan-shah-nearmap over 1 year ago - 1 comment

#947 - Support sparse inputs for Parametric UMAP

Issue - State: open - Opened by jett-crowdis over 1 year ago

#946 - sklearn parwise distances doesn't support np.matrix anymore

Pull Request - State: closed - Opened by lmcinnes almost 2 years ago

#945 - Updated densMAP citation in README

Pull Request - State: closed - Opened by hhcho almost 2 years ago

#943 - uMAP code error in example exercise

Issue - State: open - Opened by Dyn-Walker almost 2 years ago - 2 comments
Labels: documentation

#941 - Fixed unclear exception message?

Issue - State: open - Opened by author31 almost 2 years ago

#940 - Embedding interpretability using SHAP

Issue - State: open - Opened by rogo10 almost 2 years ago

#939 - `get_feature_names_out` for `UMAP` + tests

Pull Request - State: closed - Opened by CarloLepelaars almost 2 years ago - 1 comment

#938 - [FEATURE] `get_feature_names_out` for `UMAP`

Issue - State: open - Opened by CarloLepelaars almost 2 years ago - 2 comments

#936 - Esm metagenomic atlas to Interactive Visualizations

Pull Request - State: closed - Opened by BioGeek almost 2 years ago - 1 comment

#935 - Explanation of UMAP assumptions

Issue - State: open - Opened by dariober almost 2 years ago - 3 comments

#933 - Avoid calling should_pickle on models

Pull Request - State: open - Opened by jonathan-conder-sm almost 2 years ago

#930 - Questions about layouts.py

Issue - State: closed - Opened by Fzx-oss almost 2 years ago - 2 comments

#929 - Update deprecated matplotlib colormap registry

Pull Request - State: closed - Opened by yannikschaelte almost 2 years ago - 1 comment

#928 - Handle complex solutions for the Dirichlet distance.

Issue - State: open - Opened by oiao almost 2 years ago - 1 comment

#927 - ignore force approximation with precomputed knn

Pull Request - State: closed - Opened by jlmelville almost 2 years ago - 1 comment

#926 - UMAP based on correlation matrix

Issue - State: closed - Opened by bigsuicideparty almost 2 years ago - 3 comments

#925 - Minibatch training for parametric umap

Issue - State: open - Opened by theahura almost 2 years ago - 1 comment