Ecosyste.ms: Issues

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GitHub / llnl/mappgene issues and pull requests

#17 - v1.4.1

Pull Request - State: open - Opened by aavilaherrera 8 months ago - 1 comment

#16 - Adds Zika references and Zibra primers

Pull Request - State: closed - Opened by aavilaherrera about 1 year ago - 2 comments

#15 - Adds zibra primers and zika references

Pull Request - State: closed - Opened by aavilaherrera over 1 year ago

#14 - Fixes "long_description has syntax errors" releasing to PyPI

Pull Request - State: closed - Opened by aavilaherrera over 1 year ago

#13 - Dev to main, finally

Pull Request - State: closed - Opened by khyox over 1 year ago

#12 - Updates readme to match current install and usage

Pull Request - State: closed - Opened by aavilaherrera over 1 year ago

#11 - Adds a combination of v3 and v4.1 primers

Pull Request - State: closed - Opened by aavilaherrera almost 2 years ago

#10 - Fixes fastp command

Pull Request - State: closed - Opened by aavilaherrera about 2 years ago - 2 comments

#9 - Removes supplementary (chimeric) alignments

Pull Request - State: closed - Opened by aavilaherrera over 2 years ago

#8 - Release recent development work

Pull Request - State: closed - Opened by khyox over 2 years ago

#7 - Converts ivar tsv to vcf and runs thru snpEff

Pull Request - State: closed - Opened by aavilaherrera about 3 years ago

#6 - Computes genome coverage for ivar pipeline

Pull Request - State: closed - Opened by aavilaherrera about 3 years ago

#5 - Calls consensus bases on reference sequence

Pull Request - State: closed - Opened by aavilaherrera about 3 years ago

#4 - Ignores low quality insertions in primer regions

Pull Request - State: closed - Opened by aavilaherrera about 3 years ago

#3 - Make into pypi installable package

Pull Request - State: closed - Opened by jmoon1506 over 3 years ago

#2 - Refactor pipeline to use ivar

Pull Request - State: closed - Opened by jmoon1506 over 3 years ago

#1 - Flux executor

Pull Request - State: closed - Opened by jameshcorbett over 3 years ago - 1 comment