Ecosyste.ms: Issues

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GitHub / linum-uqam/linumpy issues and pull requests

#45 - Error on first installation on clean environment

Issue - State: open - Opened by CHrlS98 28 days ago

#44 - [WIP] Fully 3D reconstruction

Pull Request - State: open - Opened by CHrlS98 about 2 months ago - 1 comment

#43 - Fix memory issue on Compute Canada

Pull Request - State: open - Opened by CHrlS98 about 2 months ago - 3 comments

#42 - Adding actions to build containers on PR and main commits

Pull Request - State: open - Opened by joe-from-mtl about 2 months ago

#40 - Configuring the documentation for Sphinx and ReadTheDocs

Pull Request - State: open - Opened by joe-from-mtl about 2 months ago - 1 comment

#39 - Move nextflow pipelines to seperate repositories.

Issue - State: open - Opened by joe-from-mtl about 2 months ago

#38 - Setup a workflow to publish new releases on pypi

Issue - State: open - Opened by joe-from-mtl about 2 months ago

#37 - Uniformize the docstring to use numpy style

Issue - State: open - Opened by joe-from-mtl about 2 months ago

#36 - Remove shell_scripts and move to documentation

Issue - State: open - Opened by joe-from-mtl about 2 months ago

#35 - Units nightmare in attenuation coeffiicient code

Issue - State: open - Opened by CHrlS98 about 2 months ago

#33 - PSF and attenuation

Pull Request - State: closed - Opened by CHrlS98 about 2 months ago - 1 comment

#32 - Create .readthedocs.yaml

Pull Request - State: closed - Opened by joe-from-mtl about 2 months ago

#31 - New methods to calibrate the OCT fringe reconstruction

Pull Request - State: open - Opened by joe-from-mtl about 2 months ago

#30 - Check if scripts in linumpy-private are useful

Issue - State: open - Opened by joe-from-mtl about 2 months ago

#29 - Document the 3D reconstruction pipeline

Issue - State: open - Opened by joe-from-mtl about 2 months ago

#28 - Missing steps for 3D reconstruction pipeline

Issue - State: open - Opened by CHrlS98 2 months ago

#26 - Make the repo public

Issue - State: closed - Opened by joe-from-mtl 3 months ago

#23 - Bug fix for the zarr viewer resolution

Pull Request - State: closed - Opened by joe-from-mtl 3 months ago

#22 - 3D reconstruction workflow crashes with OUT OF MEMORY

Issue - State: open - Opened by CHrlS98 3 months ago - 3 comments

#21 - [WIP] Migrate PSF and attenuation correction

Pull Request - State: closed - Opened by CHrlS98 3 months ago - 6 comments

#20 - Added Thorlabs Polarization sensitive OCT compatibility.

Pull Request - State: open - Opened by MohamadHawshar 3 months ago - 1 comment

#19 - Adapt 3D reconstruction pipeline [part 1]

Pull Request - State: closed - Opened by CHrlS98 3 months ago - 1 comment

#18 - PEP8 Coding style

Issue - State: closed - Opened by CHrlS98 4 months ago - 2 comments

#16 - Workflow to preprocess the tiles for the 2.5D reconstruction

Pull Request - State: open - Opened by joe-from-mtl 6 months ago - 1 comment

#14 - Update installation

Pull Request - State: closed - Opened by CHrlS98 4 months ago - 9 comments

#13 - Develop refactor allen download

Pull Request - State: closed - Opened by joe-from-mtl almost 2 years ago

#12 - Remove the allensdk dependency

Issue - State: closed - Opened by joe-from-mtl almost 2 years ago - 1 comment

#11 - Feature setup refactor

Pull Request - State: closed - Opened by joe-from-mtl almost 2 years ago

#10 - Publish on pypi

Issue - State: closed - Opened by joe-from-mtl almost 2 years ago

#9 - Bump certifi from 2022.6.15 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#8 - Bump pillow from 9.1.1 to 9.3.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#7 - Adding a script to download the allen mouse brain template

Pull Request - State: closed - Opened by joe-from-mtl over 2 years ago

#6 - Bump pillow from 9.1.0 to 9.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#5 - Add automated tests for new commits

Issue - State: open - Opened by joe-from-mtl almost 3 years ago

#4 - Choose a license

Issue - State: closed - Opened by joe-from-mtl almost 3 years ago

#3 - Build a singularity image based on the docker image

Issue - State: open - Opened by joe-from-mtl almost 3 years ago
Labels: enhancement

#2 - Build and deploy the docker container

Issue - State: open - Opened by joe-from-mtl almost 3 years ago - 1 comment
Labels: enhancement

#1 - Update the installation instructions

Issue - State: closed - Opened by joe-from-mtl almost 3 years ago