Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / lindermanlab/ssm issues and pull requests

#170 - Issue with Identity Emissions

Issue - State: open - Opened by YUJINHAN93 about 1 month ago

#169 - Trouble with cstats during installation

Issue - State: open - Opened by Lucas97223 6 months ago

#168 - Question about alpha calculation in forward pass

Issue - State: open - Opened by ncguilbeault 8 months ago - 1 comment

#167 - rSLDS fitting changes significantly each time I initializa

Issue - State: open - Opened by juliagorman 9 months ago - 4 comments

#165 - Trouble with SSM installation

Issue - State: open - Opened by nightshade2303 about 1 year ago - 7 comments

#164 - Question on method ssm.HMM (GLM weight sign)

Issue - State: open - Opened by Gentu-Ding over 1 year ago - 2 comments

#163 - Finding the variance explained for # of dimensions

Issue - State: closed - Opened by woohyunk1104 over 1 year ago - 4 comments

#162 - Time-varying C matrix?

Issue - State: open - Opened by jmasis over 1 year ago - 1 comment

#161 - Is there any documentation for the ssm package, or at least for GLM-HMM part?

Issue - State: closed - Opened by faezeamin almost 2 years ago - 1 comment

#160 - How to use _vjp_solve_banded_A

Issue - State: closed - Opened by tomsturges almost 2 years ago - 1 comment

#159 - Explained variance for the rSLDS latents

Issue - State: open - Opened by neven-x almost 2 years ago - 3 comments

#158 - Constraining AR-HMM emission parameters

Issue - State: open - Opened by JustFineNeuro almost 2 years ago - 4 comments

#157 - Diagonal Gaussian emissions for LDS?

Issue - State: closed - Opened by charlesincharge almost 2 years ago - 1 comment

#156 - Responsiveness demo

Pull Request - State: closed - Opened by mikewojnowicz almost 2 years ago

#155 - Unit tests fail in Python 3.8

Issue - State: closed - Opened by mikewojnowicz about 2 years ago - 1 comment

#154 - ARHMM usage

Issue - State: closed - Opened by shreyask3107 about 2 years ago - 1 comment

#153 - error during installation

Issue - State: closed - Opened by samdeoxys1 over 2 years ago - 4 comments

#152 - Singularity Container for the code

Issue - State: open - Opened by shreyask3107 over 2 years ago

#151 - [DOC, INFRA] Drop SG for now and move to MyST

Pull Request - State: closed - Opened by emdupre over 2 years ago

#150 - [DOC, INFRA] Initial sphinx site

Pull Request - State: closed - Opened by emdupre over 2 years ago - 3 comments

#148 - access lag-specific autoregressive A matrix

Issue - State: closed - Opened by r-shruthi11 almost 3 years ago - 1 comment

#147 - documentation: add pointer to ssm-jax

Issue - State: closed - Opened by murphyk almost 3 years ago

#146 - using GPU

Issue - State: closed - Opened by jwk0117 almost 3 years ago - 1 comment

#145 - State Transition Parameters

Issue - State: closed - Opened by zhangyongheng78 almost 3 years ago - 1 comment

#144 - installation error

Issue - State: closed - Opened by zhangyongheng78 about 3 years ago - 1 comment

#143 - patch discrete entropy calculation

Pull Request - State: closed - Opened by davidzoltowski about 3 years ago

#142 - Prediction of observations on a test set

Issue - State: closed - Opened by sarathnayar about 3 years ago - 3 comments

#141 - HMM input driven observations module parameters retrieval

Issue - State: closed - Opened by NeuTTH over 3 years ago - 1 comment

#140 - Unspecified numpy version in ssm raising type error

Issue - State: open - Opened by mshallow over 3 years ago

#139 - slds fit shape bug when use inputdriven transition

Issue - State: closed - Opened by sherryxia2016 over 3 years ago - 2 comments

#138 - Can input driven transitions and observations be combined?

Issue - State: closed - Opened by dbdorman over 3 years ago - 1 comment

#137 - Update install instructions

Pull Request - State: closed - Opened by ahwillia over 3 years ago

#136 - Multiple-trial analysis

Issue - State: closed - Opened by aleksejs-fomins over 3 years ago - 2 comments

#135 - Constraining C during PLDS model fitting

Issue - State: closed - Opened by erinshappell over 3 years ago - 1 comment

#133 - Installing on Windows

Issue - State: closed - Opened by pbouss over 3 years ago - 2 comments

#132 - Merge small fork commits back to base repo

Pull Request - State: closed - Opened by schlagercollin almost 4 years ago

#131 - Fit HMM to financial time series and generate samples

Issue - State: closed - Opened by mackancurtaincheeks almost 4 years ago - 1 comment

#130 - LinAlg error when sampling from trained hmm

Issue - State: open - Opened by vcorbit almost 4 years ago

#128 - pass input size M when creating mp emissions models, so F is right shape

Pull Request - State: closed - Opened by orrenkt almost 4 years ago - 2 comments

#127 - Update lds.py

Pull Request - State: closed - Opened by ghuckins almost 4 years ago - 1 comment

#126 - Missing numpy-related header file

Issue - State: closed - Opened by velezbeltran about 4 years ago - 2 comments

#125 - Input driven observations ("GLM-HMM")

Pull Request - State: closed - Opened by zashwood about 4 years ago - 2 comments

#124 - fitting a subset of parameters

Issue - State: closed - Opened by dikshagup about 4 years ago - 2 comments

#123 - Fixing small bug in sticky recurrent transitions

Pull Request - State: closed - Opened by jglaser2 about 4 years ago

#121 - Cleaning up multipopulation extensions

Pull Request - State: closed - Opened by jglaser2 over 4 years ago

#120 - Multipop

Pull Request - State: closed - Opened by jglaser2 over 4 years ago

#119 - Poisson Emissions Numerical Stability

Pull Request - State: closed - Opened by bantin over 4 years ago

#118 - single uni-variate time series

Issue - State: open - Opened by andrewcztrack over 4 years ago

#117 - Input-Driven HMM with diagonal_gaussian Observations

Issue - State: closed - Opened by davidgwyrick over 4 years ago

#116 - Jupyter kernel crashing during fit

Issue - State: closed - Opened by davidgwyrick over 4 years ago - 4 comments

#114 - fix bug

Pull Request - State: closed - Opened by gaoyuanjun over 4 years ago - 1 comment

#113 - Missing module 'ssm.plots'

Issue - State: open - Opened by biancasama over 4 years ago - 1 comment

#112 - Constrained Transitions and Poisson Demo

Pull Request - State: closed - Opened by bantin over 4 years ago - 1 comment

#111 - Add option "verbose" to HSMM.fit

Pull Request - State: closed - Opened by bagibence over 4 years ago - 1 comment

#110 - Added <verbose> parameter for toggling SLDS fitting outputs.

Pull Request - State: closed - Opened by guyhwilson over 4 years ago - 2 comments

#109 - Fix incompatibility with scipy>1.2.0

Pull Request - State: closed - Opened by mmyros over 4 years ago - 4 comments

#108 - Hierarchical SLDS not implemented

Issue - State: open - Opened by bagibence over 4 years ago - 3 comments
Labels: enhancement

#107 - Fix Poisson Emissions to allow pickling

Pull Request - State: closed - Opened by bantin over 4 years ago

#106 - Can't pickle Poisson Emissions posterior object

Issue - State: open - Opened by bantin over 4 years ago

#105 - Error of running HSMM example.

Issue - State: closed - Opened by bowfan94 over 4 years ago - 4 comments

#104 - Remove J0 and h0 args for Robust AR M-step

Pull Request - State: closed - Opened by bantin almost 5 years ago

#103 - proposed fix for issue 102. exposing prior on Sigma and relaxing its…

Pull Request - State: closed - Opened by slinderman almost 5 years ago

#101 - Error is rSLDS notebook

Issue - State: closed - Opened by mafrasiabi almost 5 years ago - 3 comments

#100 - Fitting multiple datas broken on master

Issue - State: closed - Opened by bantin almost 5 years ago - 1 comment

#99 - Errors when fitting with inputs

Issue - State: closed - Opened by davidzoltowski almost 5 years ago - 3 comments

#98 - Add Gradient Method for Laplace-EM params update

Issue - State: closed - Opened by bantin almost 5 years ago
Labels: enhancement, wontfix

#97 - Exact M-Step for Certain Emissions Classes

Issue - State: open - Opened by bantin almost 5 years ago - 4 comments
Labels: enhancement

#96 - Exact entropy and Exact M-Step

Pull Request - State: closed - Opened by bantin almost 5 years ago - 1 comment

#95 - Unresolved reference 'N' in file "lds.py", master branch

Issue - State: closed - Opened by lfywork almost 5 years ago - 1 comment

#94 - Linalg Error during fit with Newton's Method

Issue - State: open - Opened by bantin almost 5 years ago - 1 comment

#93 - Exact M-Step for Linear-Gaussian LDS

Pull Request - State: closed - Opened by bantin almost 5 years ago

#92 - Initialization of autoregressive observations not consistent with model

Issue - State: closed - Opened by themattinthehatt almost 5 years ago - 1 comment

#91 - Add covariance calculation for exact LDS m-step

Pull Request - State: closed - Opened by bantin almost 5 years ago

#90 - OrthogonalGaussianEmissions very slow when fitting

Issue - State: open - Opened by bantin about 5 years ago

#89 - Fix Identity Emissions

Pull Request - State: closed - Opened by bantin about 5 years ago

#88 - Identity Emissions don't work

Issue - State: closed - Opened by bantin about 5 years ago

#87 - compilation issues on mac os 10.14.6 mojave

Issue - State: closed - Opened by anne-urai about 5 years ago - 1 comment
Labels: installation

#86 - Nosetests Failure

Issue - State: open - Opened by davidgwyrick about 5 years ago - 6 comments

#85 - Regime Change Calculation - An example

Issue - State: closed - Opened by andrewczgithub about 5 years ago - 8 comments

#84 - Constrained transitions

Pull Request - State: closed - Opened by bantin about 5 years ago - 1 comment

#83 - Fix hmm filter to use Numba

Pull Request - State: closed - Opened by bantin about 5 years ago

#82 - HMM.filter fails after switch to Numba

Issue - State: closed - Opened by bantin about 5 years ago - 8 comments

#81 - Add constrainedStationaryTransitions

Pull Request - State: closed - Opened by bantin about 5 years ago - 1 comment

#80 - Newton step fails for Students T DOF Parameter

Issue - State: closed - Opened by bantin about 5 years ago - 2 comments

#79 - HSMM example fails

Issue - State: closed - Opened by ktrapeznikov about 5 years ago - 1 comment

#78 - StudentsTEmisssions log-likelihoods are the wrong shape

Issue - State: closed - Opened by bantin about 5 years ago

#77 - NaNs in gradients when fitting RSLDS

Issue - State: closed - Opened by bantin about 5 years ago - 1 comment

#76 - Fitting fails with AR emissions

Issue - State: open - Opened by bantin about 5 years ago - 2 comments

#75 - sampling with AR observations overflows

Issue - State: closed - Opened by bantin about 5 years ago - 1 comment

#74 - sampling with Poisson emissions gives ValueError

Issue - State: closed - Opened by bantin about 5 years ago - 3 comments

#73 - Fitting LDS with no dynamics fails

Issue - State: closed - Opened by bantin about 5 years ago - 1 comment

#72 - fix regressions

Pull Request - State: closed - Opened by bantin about 5 years ago - 2 comments