Ecosyste.ms: Issues

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GitHub / limix/pandas-plink issues and pull requests

#37 - Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows

Pull Request - State: open - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#36 - set pure=False in call to Dask to avoid hashing buff

Pull Request - State: closed - Opened by bgorissen 9 months ago - 1 comment

#35 - pandas_plink is slow since Dask 2024.2

Issue - State: closed - Opened by bgorissen 9 months ago - 4 comments

#34 - Chromosome names for X, Y and MT?

Issue - State: closed - Opened by dbolser 12 months ago - 2 comments

#33 - Update usage.rst

Pull Request - State: closed - Opened by dbolser 12 months ago - 3 comments

#31 - replaced deprecated pandas lineterminator arg

Pull Request - State: closed - Opened by rborder over 1 year ago - 6 comments

#30 - support for int8

Issue - State: closed - Opened by rborder almost 2 years ago - 5 comments

#29 - Allow passing of pathlib objects instead of string paths

Issue - State: closed - Opened by jan-engelmann almost 2 years ago - 1 comment

#28 - Genotype code wrong!

Issue - State: closed - Opened by liqingbioinfo over 2 years ago - 6 comments

#27 - Increase of memory

Issue - State: closed - Opened by FBoyang about 3 years ago - 2 comments

#26 - Install 2.2.9 using pip?

Issue - State: closed - Opened by CholoTook over 3 years ago - 5 comments

#25 - Hangs on bed.compute()

Issue - State: closed - Opened by jvierstra over 3 years ago - 2 comments

#24 - Providing a more useful example.

Pull Request - State: closed - Opened by CholoTook over 3 years ago - 1 comment

#23 - Hi Danilo, question about writing Plink file from GEO SNP-Chip data

Issue - State: closed - Opened by CholoTook over 3 years ago - 5 comments

#22 - ❓ `np.nan` value from bed.compute()

Issue - State: closed - Opened by SamuelCahyawijaya about 4 years ago - 2 comments

#21 - Slower performance of read_plink1_bin vs read_plink

Issue - State: closed - Opened by francois-a about 4 years ago - 3 comments

#19 - Fix for Pandas 1.1.0 (ValueError: Names should be an ordered collection)

Pull Request - State: closed - Opened by francois-a over 4 years ago - 1 comment

#18 - Pandas 1.1.0 error: ValueError: Names should be an ordered collection.

Issue - State: closed - Opened by francois-a over 4 years ago - 1 comment

#17 - Speed up reading of single variants?

Issue - State: closed - Opened by koelling over 4 years ago - 3 comments

#16 - Accessing and Subsetting Error

Issue - State: closed - Opened by amadoudiogobarry over 4 years ago - 2 comments

#15 - genotype values issue

Issue - State: closed - Opened by liusy-jz over 4 years ago - 10 comments

#14 - Saving dataframe as plink?

Issue - State: closed - Opened by loftusa over 4 years ago - 4 comments
Labels: enhancement

#13 - reading plink2 format?

Issue - State: open - Opened by liangyy over 4 years ago - 4 comments
Labels: enhancement

#12 - Reading Data to Xarray Taking a long Time

Issue - State: closed - Opened by robloughnan almost 5 years ago - 1 comment

#11 - Сannot import name 'read_plink1_bin' from 'pandas_plink'

Issue - State: closed - Opened by kamilla0503 over 5 years ago - 1 comment

#10 - Py3.7 with conda

Issue - State: closed - Opened by quattro over 5 years ago - 2 comments

#9 - Support for additional dtypes?

Issue - State: closed - Opened by francois-a about 6 years ago - 2 comments

#8 - error on importing plink data

Issue - State: closed - Opened by inti over 6 years ago - 2 comments

#7 - requirements

Issue - State: closed - Opened by inti over 6 years ago - 3 comments

#6 - ImportError: No module named 'pandas_plink.bed_reader'

Issue - State: closed - Opened by WillJStone over 6 years ago - 4 comments

#5 - Memory explosion

Issue - State: closed - Opened by rmporsch almost 7 years ago - 1 comment

#4 - ImportError: No module named 'pandas_plink.bed_reader'

Issue - State: closed - Opened by Xparx about 7 years ago - 5 comments

#3 - Bug - 'join' is not defined

Issue - State: closed - Opened by danielseaton about 7 years ago

#2 - indexing of bim and fam files removed

Pull Request - State: closed - Opened by fpcasale over 7 years ago - 2 comments

#1 - Bim and fam files are ordered by index

Issue - State: closed - Opened by krrome over 7 years ago - 2 comments