Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / limix/limix issues and pull requests

#117 - Documentation link

Issue - State: open - Opened by karbalaei over 1 year ago - 1 comment

#116 - Dead?

Issue - State: open - Opened by quattro over 1 year ago - 1 comment

#114 - Mixed rf module/example

Issue - State: open - Opened by clairecoleman1 over 3 years ago

#112 - issue fix for automatic documentation

Pull Request - State: closed - Opened by huangyh09 over 3 years ago

#111 - Issues with version 3.0.4

Issue - State: open - Opened by Dario-Galanti almost 4 years ago

#110 - Limix Documentation Request

Issue - State: closed - Opened by AndrewBalmer almost 4 years ago

#109 - Links to documentation doesn't work

Issue - State: open - Opened by zlye about 4 years ago - 13 comments

#108 - forum.limix.io inacessible?

Issue - State: open - Opened by joegage about 4 years ago - 2 comments

#106 - cannot import name 'effsizes_se'

Issue - State: closed - Opened by Xenophong about 4 years ago

#105 - Why no gower_norm?

Issue - State: open - Opened by linnabrown about 4 years ago

#104 - fix import of pandas InvalidIndexError

Pull Request - State: open - Opened by phue over 4 years ago - 1 comment

#103 - pandas.core.index warning

Issue - State: open - Opened by yuguanw over 4 years ago

#102 - eQTL Binder example

Issue - State: open - Opened by snowformatics over 4 years ago

#101 - Variance decomposition of two correlated traits

Issue - State: open - Opened by TheoDps over 4 years ago

#100 - Genetic Covariance

Issue - State: open - Opened by quattro over 4 years ago

#99 - numpy.linalg.LinAlgError: SVD did not converge

Issue - State: open - Opened by frankwendt5010 almost 5 years ago - 7 comments

#98 - Unable to append random effect matrices to varDec object

Issue - State: open - Opened by prashanthi-ravichandran almost 5 years ago - 2 comments

#97 - Predict genetic effects

Issue - State: open - Opened by rm18 about 5 years ago

#96 - Blocking effect as a covariate?

Issue - State: closed - Opened by ellisztamas over 5 years ago - 2 comments

#95 - K matrix as covariance matrix

Issue - State: closed - Opened by picla over 5 years ago - 5 comments

#94 - A few typos in the doc on QTL

Issue - State: closed - Opened by Romain-B over 5 years ago - 1 comment

#93 - Estimating the kinship matrix from human genotype data

Issue - State: closed - Opened by kauralasoo over 5 years ago - 2 comments

#92 - StructLMM removed from Limix? Why?

Issue - State: open - Opened by cld512 over 5 years ago - 2 comments

#91 - Installing the latest version of limix on macOS

Issue - State: closed - Opened by kauralasoo almost 6 years ago - 1 comment

#90 - memory leak on iteration?

Issue - State: closed - Opened by lukemn almost 6 years ago - 11 comments

#89 - Example: glucose condition Fails

Issue - State: closed - Opened by AmmarMalik93 almost 6 years ago - 4 comments

#88 - Unclear documentation: st_iscan

Issue - State: closed - Opened by ivanov-v-v almost 6 years ago - 4 comments

#87 - Issues imporing from limix.stats

Issue - State: closed - Opened by bader-arouisse almost 6 years ago - 1 comment

#86 - I installed the stable version using conda but import fails

Issue - State: closed - Opened by jasiozaucha almost 6 years ago - 8 comments

#85 - new conda recipes

Issue - State: closed - Opened by quattro almost 6 years ago - 7 comments

#84 - tests passing again

Pull Request - State: closed - Opened by horta almost 6 years ago

#83 - StructLMM slow at 5 samples

Issue - State: closed - Opened by horta almost 6 years ago - 1 comment

#82 - Limix command-line interface

Pull Request - State: closed - Opened by horta almost 6 years ago

#81 - Develop

Pull Request - State: closed - Opened by horta almost 6 years ago

#80 - merge for paolo

Pull Request - State: closed - Opened by horta almost 6 years ago

#78 - StructLMM implemented in LIMIX2?

Issue - State: open - Opened by mkerin about 6 years ago

#77 - Working on the result class for QTL analysis

Pull Request - State: closed - Opened by horta about 6 years ago

#76 - Variance decomposition

Pull Request - State: closed - Opened by horta about 6 years ago

#75 - Develop

Pull Request - State: closed - Opened by horta about 6 years ago

#74 - Resyncing branchs develop and master

Pull Request - State: closed - Opened by horta about 6 years ago

#73 - Missing documentation for limix 2.0

Issue - State: closed - Opened by avinuela about 6 years ago - 5 comments

#72 - added model.struct_lmm

Pull Request - State: closed - Opened by fpcasale about 6 years ago - 1 comment

#71 - QTL + GWAS inteface and documentation

Pull Request - State: closed - Opened by horta about 6 years ago

#70 - 2.0.0 - added tests to docs + syntax adaptation

Pull Request - State: closed - Opened by fpcasale about 6 years ago

#69 - Pr/68

Pull Request - State: closed - Opened by horta about 6 years ago

#68 - 2.0.0

Pull Request - State: closed - Opened by fpcasale about 6 years ago - 2 comments

#67 - Build failing on travis due to lock/xarray related stuff

Issue - State: closed - Opened by horta about 6 years ago

#66 - python 2 construct in limix-tutorials/data/__init__.py

Issue - State: closed - Opened by parsifal9 about 6 years ago - 1 comment

#65 - --filter has been implemented

Pull Request - State: closed - Opened by horta about 6 years ago - 1 comment

#64 - Hiding expensive imports

Pull Request - State: closed - Opened by horta about 6 years ago

#63 - _display subpackage

Pull Request - State: closed - Opened by horta about 6 years ago

#62 - Standardising names

Pull Request - State: closed - Opened by horta about 6 years ago - 2 comments

#61 - Interface for scan

Pull Request - State: closed - Opened by horta about 6 years ago

#60 - iscan function

Pull Request - State: closed - Opened by horta over 6 years ago

#59 - unclear documentation for multi trait analysis

Issue - State: closed - Opened by tavareshugo over 6 years ago - 8 comments

#58 - API

Pull Request - State: closed - Opened by horta over 6 years ago

#57 - Code cleanup and xarray usage

Pull Request - State: closed - Opened by horta over 6 years ago

#56 - Missing SNPs from an entire half of a chromosome

Issue - State: closed - Opened by mgalardini over 6 years ago - 14 comments

#55 - Command line GWAS

Pull Request - State: closed - Opened by horta over 6 years ago

#54 - Fix deprecation warnings

Pull Request - State: closed - Opened by horta over 6 years ago

#53 - figure test

Pull Request - State: closed - Opened by horta over 6 years ago

#52 - Cmd.rst tidyup

Pull Request - State: closed - Opened by horta over 6 years ago

#51 - Gemma phenotype reading

Pull Request - State: closed - Opened by horta over 6 years ago - 1 comment

#50 - Command line for gwas analysis.

Pull Request - State: closed - Opened by horta over 6 years ago

#49 - Log Likelihood-ratio error

Issue - State: closed - Opened by Minglc over 6 years ago - 2 comments

#48 - crossValidation in VarianceDecomposition

Issue - State: closed - Opened by Sim19 over 6 years ago

#47 - AttributeError from liknorm while running glmm

Issue - State: closed - Opened by rbpisupati over 6 years ago - 12 comments

#46 - Add two random effects in the variance decomposition mode

Issue - State: closed - Opened by Minglc over 6 years ago - 8 comments

#45 - How to fit a mixed model with several kinship matrix

Issue - State: closed - Opened by Minglc over 6 years ago - 1 comment

#44 - Genotype convert error

Issue - State: closed - Opened by zhaouu over 6 years ago - 1 comment

#43 - Interaction update to allow permutation for genotypes. S1

Pull Request - State: closed - Opened by Bonder-MJ almost 7 years ago

#41 - limx install failed

Issue - State: closed - Opened by zhaouu about 7 years ago - 5 comments

#40 - Error obtaining SE in VarDec

Issue - State: closed - Opened by inti about 7 years ago - 9 comments

#39 - missing values in varianceDecomposition

Issue - State: open - Opened by inti about 7 years ago - 9 comments

#38 - deprecated

Issue - State: closed - Opened by nhorwitz about 7 years ago - 1 comment

#37 - bash install development version

Issue - State: closed - Opened by horta over 7 years ago - 2 comments

#36 - Check variable layout

Issue - State: closed - Opened by horta over 7 years ago

#35 - panama in limix/limix missing

Issue - State: closed - Opened by Sim19 over 7 years ago - 2 comments

#34 - Cache parameters for second test which has the same kinship as previous

Issue - State: closed - Opened by Bonder-MJ over 7 years ago - 1 comment

#33 - Error trying to move a hack

Issue - State: closed - Opened by ameliebaud over 7 years ago

#32 - economic_svd did not converge

Issue - State: closed - Opened by horta over 7 years ago - 1 comment

#31 - limix 1.1 linear model implementation is missing

Issue - State: closed - Opened by Bonder-MJ over 7 years ago - 1 comment

#30 - Specify maximum number of threads

Issue - State: closed - Opened by Bonder-MJ over 7 years ago - 1 comment

#25 - what exactly does limix.qtl.qtl_test_interaction_lmm test?

Issue - State: closed - Opened by annacuomo over 7 years ago

#19 - Implement plot_bonferroni linear version

Issue - State: closed - Opened by horta over 7 years ago

#18 - Verify and refactor qvalues function

Issue - State: closed - Opened by horta over 7 years ago

#15 - Get rid of specific parameter names (like snps)

Issue - State: closed - Opened by horta over 7 years ago

#11 - Convert documentation style to numpy style, of every function.

Issue - State: closed - Opened by horta over 7 years ago

#10 - Nicely print a summary of a QTL and heritability result.

Issue - State: closed - Opened by horta over 7 years ago

#9 - I/O for BGEN file format.

Issue - State: closed - Opened by horta over 7 years ago

#8 - Add full-world QTL and heritability analysis into readthedocs.

Issue - State: closed - Opened by horta over 7 years ago