Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / lilab-bcb/pegasus issues and pull requests

#213 - Fix bug when generating h5ad output

Pull Request - State: closed - Opened by yihming over 3 years ago

#212 - Finish up NMF and iNMF-related options in command line tool

Pull Request - State: closed - Opened by yihming over 3 years ago

#211 - Updated aggregate_matrix for sample-specific nUMI/nGene filtration

Pull Request - State: closed - Opened by bli25 over 3 years ago

#210 - Added nmf and inmf for pipeline running

Pull Request - State: closed - Opened by bli25 over 3 years ago

#209 - Added doubletFinder in the reference for doublet_detection.pdf

Pull Request - State: closed - Opened by bli25 over 3 years ago

#208 - Updated doublet detection doc

Pull Request - State: closed - Opened by bli25 over 3 years ago

#207 - Updated doublet detection documentation

Pull Request - State: closed - Opened by bli25 over 3 years ago

#206 - Fixed a bug for calculating Fisher's exact test

Pull Request - State: closed - Opened by bli25 over 3 years ago

#205 - Fixed a bug for calculating Fisher's exact test

Pull Request - State: closed - Opened by bli25 over 3 years ago

#204 - Fixed a bug in annotate function

Pull Request - State: closed - Opened by bli25 over 3 years ago

#203 - Updated

Pull Request - State: closed - Opened by bli25 over 3 years ago

#202 - Added manual_correction option to doublet detection routine

Pull Request - State: closed - Opened by bli25 over 3 years ago

#201 - Switched reporting order of neotypic doublet rate and neotypic double…

Pull Request - State: closed - Opened by bli25 over 3 years ago

#200 - Added neotypic doublet rate in simulation as logger info output

Pull Request - State: closed - Opened by bli25 over 3 years ago

#199 - Fixed a bug in doublet detection

Pull Request - State: closed - Opened by bli25 over 3 years ago

#198 - Updated doublet detection

Pull Request - State: closed - Opened by bli25 over 3 years ago

#197 - resolve bullets not showing issue caused by docutils v0.17+

Pull Request - State: closed - Opened by yihming over 3 years ago

#196 - Updated release doc

Pull Request - State: closed - Opened by bli25 over 3 years ago

#195 - Update human_brain_cell_markers.json

Pull Request - State: closed - Opened by hoondy over 3 years ago - 1 comment

#193 - finalized doublet detection algo

Pull Request - State: closed - Opened by bli25 over 3 years ago

#192 - Updated

Pull Request - State: closed - Opened by bli25 over 3 years ago

#191 - Updated doublet

Pull Request - State: closed - Opened by bli25 over 3 years ago

#190 - Updated doublet detection

Pull Request - State: closed - Opened by bli25 over 3 years ago

#189 - debug

Pull Request - State: closed - Opened by bli25 over 3 years ago

#188 - KeyError: 'n_genes'

Issue - State: closed - Opened by bschilder over 3 years ago - 4 comments

#187 - Support umap-learn v0.5+

Pull Request - State: closed - Opened by yihming over 3 years ago

#186 - Several updates

Pull Request - State: closed - Opened by bli25 over 3 years ago

#185 - Kernel dies during pg.neighbors()

Issue - State: closed - Opened by bschilder over 3 years ago - 6 comments

#184 - Conda yaml for pegasus

Issue - State: closed - Opened by bschilder over 3 years ago - 16 comments

#183 - Seurat? Conditions to channels?

Issue - State: closed - Opened by s849 over 3 years ago - 1 comment

#182 - Issue while trying to run pegasus_analysis.ipynb

Issue - State: closed - Opened by rgranit over 3 years ago - 4 comments

#181 - Bug fixes, added more df_qc columns, ddqc boxplots

Pull Request - State: closed - Opened by michael-alperovich over 3 years ago

#180 - fix: replaced INF constant with 10 ** 10

Pull Request - State: closed - Opened by michael-alperovich over 3 years ago

#179 - AttributeError: 'UnimodalData' object has no attribute 'filter_data'

Issue - State: closed - Opened by Zifeng-L over 3 years ago - 2 comments

#178 - resolve conflict with numba

Pull Request - State: closed - Opened by yihming over 3 years ago

#176 - qcviolin separated plots?

Issue - State: closed - Opened by YichaoOU over 3 years ago - 2 comments

#175 - Make annotate function result as categorical

Pull Request - State: closed - Opened by bli25 over 3 years ago

#174 - Improved human immune cell markers; improved auto cell type assignmen…

Pull Request - State: closed - Opened by bli25 over 3 years ago

#156 - ValueError: fill value must be in categories

Issue - State: closed - Opened by swemeshy almost 4 years ago - 2 comments

#147 - AttributeError: 'UnimodalDataView' object has no attribute '_clean_tmp'

Issue - State: closed - Opened by Zifeng-L almost 4 years ago - 3 comments

#103 - Fixed bugs in annotate_cluster

Pull Request - State: closed - Opened by bli25 about 4 years ago

#77 - Illegal instruction (core dumped)

Issue - State: closed - Opened by ptdtan over 4 years ago - 6 comments

#63 - Added condition to command line de analysis tool

Pull Request - State: closed - Opened by joshua-gould over 4 years ago - 1 comment

#30 - Change adata.varm['de_res'] to tidy data

Issue - State: closed - Opened by joshua-gould almost 5 years ago

#25 - highly_variable_features: change consider batch to batch field in obs

Issue - State: closed - Opened by joshua-gould almost 5 years ago - 1 comment

#24 - highly_variable_features uses data.uns["Channels"]

Issue - State: closed - Opened by joshua-gould almost 5 years ago - 3 comments