Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / lilab-bcb/cirrocumulus issues and pull requests

#218 - added embedding layers not showing

Issue - State: open - Opened by ShuonanChen 3 months ago

#217 - Overlaying H&E stained images with CosMx data

Issue - State: open - Opened by gohantsubu 4 months ago - 4 comments

#216 - Add browse dataset option

Pull Request - State: open - Opened by danielquintao 5 months ago - 1 comment

#215 - scale bar

Issue - State: open - Opened by scseeman 5 months ago

#214 - updated

Pull Request - State: closed - Opened by joshua-gould 5 months ago

#213 - Updated for latest anndata. Updated pre-commit

Pull Request - State: closed - Opened by joshua-gould 5 months ago

#212 - The package is not up-to-date

Issue - State: closed - Opened by ShuonanChen 5 months ago - 1 comment

#211 - Static website online dataset

Issue - State: closed - Opened by worsteggs 9 months ago - 2 comments

#210 - [cirro-server] open dataset from url path

Issue - State: open - Opened by yuhuyoyo about 1 year ago - 6 comments

#209 - Is it possible to limit user operations?

Issue - State: open - Opened by QqQss about 1 year ago - 1 comment

#208 - ImportError: cannot import name 'Index1D' from 'anndata.compat'

Issue - State: closed - Opened by anishchakka about 1 year ago - 1 comment

#207 - Viewing the visit history of the website

Issue - State: open - Opened by SNOL2 about 1 year ago - 1 comment

#206 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: open - Opened by pre-commit-ci[bot] over 1 year ago

#205 - inline index types

Pull Request - State: closed - Opened by joshua-gould over 1 year ago

#204 - 1.1.57

Pull Request - State: closed - Opened by joshua-gould over 1 year ago

#202 - can not start this project with webstorm IDE

Issue - State: open - Opened by honghh2018 over 1 year ago - 1 comment

#201 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#200 - updated

Pull Request - State: closed - Opened by joshua-gould over 1 year ago

#199 - de display update

Pull Request - State: closed - Opened by joshua-gould over 1 year ago

#198 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#197 - 1.1.55

Pull Request - State: closed - Opened by joshua-gould over 1 year ago

#196 - Displaying partial data seperately in the Embeddings interface.

Issue - State: closed - Opened by SNOL2 over 1 year ago - 2 comments

#195 - Static Website on Google App Engine and Cloud Storage

Issue - State: closed - Opened by officialprofile over 1 year ago - 8 comments

#194 - new users for static website

Issue - State: closed - Opened by BIGZijianLi over 1 year ago

#193 - spots not shown correctly for my Visium data

Issue - State: closed - Opened by zglu over 1 year ago - 5 comments

#192 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#191 - Add Xenium support

Pull Request - State: closed - Opened by joshua-gould almost 2 years ago

#190 - 1.1.53

Pull Request - State: closed - Opened by joshua-gould almost 2 years ago

#189 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#188 - Paste feature list

Issue - State: closed - Opened by SNOL2 almost 2 years ago - 2 comments

#187 - fix spot coords swap

Pull Request - State: closed - Opened by joshua-gould almost 2 years ago

#186 - 1.1.52.post1

Pull Request - State: closed - Opened by joshua-gould almost 2 years ago

#185 - missing image

Pull Request - State: closed - Opened by joshua-gould almost 2 years ago

#184 - fixes for rtd

Pull Request - State: closed - Opened by joshua-gould almost 2 years ago

#183 - Trajectory

Pull Request - State: closed - Opened by joshua-gould almost 2 years ago

#182 - statistical test

Issue - State: closed - Opened by SNOL2 almost 2 years ago - 4 comments

#181 - display multiple Visium datasets on top of H&E images

Issue - State: closed - Opened by zglu almost 2 years ago - 9 comments

#180 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#179 - updated

Pull Request - State: closed - Opened by joshua-gould almost 2 years ago

#178 - handle nulls

Pull Request - State: closed - Opened by joshua-gould almost 2 years ago

#177 - visualize seurat(RDS format) with cirrocumulus

Issue - State: open - Opened by wang0430 almost 2 years ago - 1 comment

#176 - default view when features are not provided

Pull Request - State: closed - Opened by joshua-gould almost 2 years ago

#175 - save default view

Pull Request - State: closed - Opened by joshua-gould almost 2 years ago

#174 - fix filtering with static website

Pull Request - State: closed - Opened by joshua-gould almost 2 years ago

#173 - select doesn't work on static website -- loading

Issue - State: closed - Opened by zglu almost 2 years ago - 2 comments

#172 - support layers in pq format

Pull Request - State: closed - Opened by joshua-gould almost 2 years ago

#171 - color scheme min/max

Pull Request - State: closed - Opened by joshua-gould almost 2 years ago

#170 - failed to use custom color range in heatmap

Issue - State: closed - Opened by SNOL2 almost 2 years ago - 1 comment

#169 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#168 - .htaccess possible ?

Issue - State: closed - Opened by colindaven almost 2 years ago - 1 comment

#167 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#166 - Python versions

Pull Request - State: closed - Opened by joshua-gould about 2 years ago

#165 - Docker compose example

Pull Request - State: closed - Opened by joshua-gould about 2 years ago

#164 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 years ago

#163 - 1.1.48

Pull Request - State: closed - Opened by joshua-gould about 2 years ago

#162 - 1.1.47

Pull Request - State: closed - Opened by joshua-gould about 2 years ago

#161 - 1.1.46

Pull Request - State: closed - Opened by joshua-gould about 2 years ago

#160 - 1.1.45

Pull Request - State: closed - Opened by joshua-gould about 2 years ago

#159 - 1.1.44

Pull Request - State: closed - Opened by joshua-gould about 2 years ago

#158 - flatten colors in adata.uns

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#157 - Does not support multiple selections for spatial transcriptomics data.

Issue - State: closed - Opened by eleozzr over 2 years ago - 2 comments

#156 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#155 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#154 - updated docs

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#153 - 1.1.42

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#152 - 1.1.41

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#151 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#150 - Freeze sort by categories

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#149 - replace NaN with empty string

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#148 - fixed sorting bug

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#147 - 1.1.38

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#146 - 1.1.37

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#145 - update version

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#144 - Firestore

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#143 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#142 - check for user

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#141 - Google auth

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#139 - update requirements

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#138 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#137 - added release notes

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#136 - updated dependencies

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#135 - fix > 1 layer

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#134 - modules can be sparse or dense

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#133 - Updated version and release notes

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#132 - Layers support

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#131 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#129 - Added pre-commit hooks and reformatted all files

Pull Request - State: closed - Opened by joshua-gould over 2 years ago

#128 - 1.1.32 updates

Pull Request - State: closed - Opened by joshua-gould almost 3 years ago

#127 - Develop

Pull Request - State: closed - Opened by joshua-gould almost 3 years ago

#126 - Use expanded color array for manual color assignment

Pull Request - State: closed - Opened by gouwens almost 3 years ago - 1 comment

#125 - Develop

Pull Request - State: closed - Opened by joshua-gould almost 3 years ago

#123 - Develop

Pull Request - State: closed - Opened by joshua-gould almost 3 years ago

#122 - Fix reading old version of prepare_data

Pull Request - State: closed - Opened by joshua-gould almost 3 years ago

#121 - Fixed incompatibility with Flask 2.1

Pull Request - State: closed - Opened by joshua-gould almost 3 years ago

#120 - Breaking changes with latest release of Werkzeug (2.1.0)

Issue - State: closed - Opened by romanhaa almost 3 years ago - 1 comment

#119 - Fixes for latest anndata.

Pull Request - State: closed - Opened by joshua-gould almost 3 years ago