Ecosyste.ms: Issues

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GitHub / likelet/lncpipe issues and pull requests

#55 - validExitStatus directive

Pull Request - State: closed - Opened by MustafaElshani about 2 years ago

#55 - validExitStatus directive

Pull Request - State: closed - Opened by MustafaElshani about 2 years ago

#54 - Unknown process directive: `validExitStatus`

Issue - State: open - Opened by MustafaElshani about 2 years ago - 2 comments

#54 - Unknown process directive: `validExitStatus`

Issue - State: open - Opened by MustafaElshani about 2 years ago - 2 comments

#53 - error

Issue - State: open - Opened by najibveto over 2 years ago

#53 - error

Issue - State: open - Opened by najibveto over 2 years ago

#52 - Unknowm configuration profile

Issue - State: open - Opened by alicia1703 over 3 years ago

#52 - Unknowm configuration profile

Issue - State: open - Opened by alicia1703 over 3 years ago

#51 - Error executing process > 'Identify_novel_lncRNA_with_criterions (1)'

Issue - State: closed - Opened by drwazeem almost 4 years ago - 2 comments

#51 - Error executing process > 'Identify_novel_lncRNA_with_criterions (1)'

Issue - State: closed - Opened by drwazeem almost 4 years ago - 2 comments

#50 - Error in renaming and classification

Issue - State: open - Opened by drwazeem almost 4 years ago

#50 - Error in renaming and classification

Issue - State: open - Opened by drwazeem almost 4 years ago

#48 - Fail to download the test data

Issue - State: closed - Opened by Meimei2 over 4 years ago - 1 comment

#48 - Fail to download the test data

Issue - State: closed - Opened by Meimei2 over 4 years ago - 1 comment

#47 - Error executing process > 'Run_LncPipeReporter (Generating report ...)'

Issue - State: closed - Opened by weinformatics over 4 years ago - 4 comments

#47 - Error executing process > 'Run_LncPipeReporter (Generating report ...)'

Issue - State: closed - Opened by weinformatics over 4 years ago - 4 comments

#46 - Error in running LncPipeTestData

Issue - State: closed - Opened by Behnaz64 over 4 years ago - 2 comments

#46 - Error in running LncPipeTestData

Issue - State: closed - Opened by Behnaz64 over 4 years ago - 2 comments

#45 - Nextflow version 0.26 Installation

Issue - State: closed - Opened by Behnaz64 over 4 years ago - 5 comments

#45 - Nextflow version 0.26 Installation

Issue - State: closed - Opened by Behnaz64 over 4 years ago - 5 comments

#44 - remove NA ERROR

Pull Request - State: closed - Opened by kodayu about 5 years ago

#44 - remove NA ERROR

Pull Request - State: closed - Opened by kodayu about 5 years ago

#43 - remove NA error

Pull Request - State: closed - Opened by kodayu about 5 years ago

#43 - remove NA error

Pull Request - State: closed - Opened by kodayu about 5 years ago

#42 - Update rename_lncRNA_2.pl

Pull Request - State: closed - Opened by kodayu over 5 years ago

#41 - HTseq analysis error reported by Venkatesh

Issue - State: closed - Opened by likelet over 5 years ago - 48 comments

#41 - HTseq analysis error reported by Venkatesh

Issue - State: closed - Opened by likelet over 5 years ago - 48 comments

#40 - Version Dependencies

Issue - State: closed - Opened by maflister over 5 years ago - 3 comments

#40 - Version Dependencies

Issue - State: closed - Opened by maflister over 5 years ago - 3 comments

#39 - Fastp error

Issue - State: closed - Opened by yzh37545 over 5 years ago - 7 comments

#39 - Fastp error

Issue - State: closed - Opened by yzh37545 over 5 years ago - 7 comments

#38 - Processing Test Data as well as Local Data ERROR

Issue - State: closed - Opened by IrenaeusChan over 5 years ago - 12 comments
Labels: help wanted

#38 - Processing Test Data as well as Local Data ERROR

Issue - State: closed - Opened by IrenaeusChan over 5 years ago - 12 comments
Labels: help wanted

#37 - merge the lncpipe:dev to original LncPipe:dev #36

Pull Request - State: open - Opened by likelet over 5 years ago

#37 - merge the lncpipe:dev to original LncPipe:dev #36

Pull Request - State: open - Opened by likelet over 5 years ago

#36 - merge the lncpipe to original LncPipe

Pull Request - State: closed - Opened by likelet over 5 years ago

#36 - merge the lncpipe to original LncPipe

Pull Request - State: closed - Opened by likelet over 5 years ago

#35 - Dev

Pull Request - State: closed - Opened by likelet over 5 years ago

#35 - Dev

Pull Request - State: closed - Opened by likelet over 5 years ago

#34 - Dev

Pull Request - State: closed - Opened by likelet over 5 years ago

#34 - Dev

Pull Request - State: closed - Opened by likelet over 5 years ago

#33 - PR test

Pull Request - State: closed - Opened by likelet over 5 years ago

#33 - PR test

Pull Request - State: closed - Opened by likelet over 5 years ago

#32 - Predict_coding_abilities_by_CPAT

Issue - State: closed - Opened by liuteng-dandiaoliutuo almost 6 years ago - 8 comments
Labels: help wanted

#32 - Predict_coding_abilities_by_CPAT

Issue - State: closed - Opened by liuteng-dandiaoliutuo almost 6 years ago - 8 comments
Labels: help wanted

#31 - when I process the test dataset, error combine_public_annotation

Issue - State: closed - Opened by liuteng-dandiaoliutuo almost 6 years ago - 2 comments

#31 - when I process the test dataset, error combine_public_annotation

Issue - State: closed - Opened by liuteng-dandiaoliutuo almost 6 years ago - 2 comments

#30 - Pipeline not working with Nextflow latest version 18.10.1

Issue - State: closed - Opened by athulmenon about 6 years ago - 7 comments
Labels: enhancement

#30 - Pipeline not working with Nextflow latest version 18.10.1

Issue - State: closed - Opened by athulmenon about 6 years ago - 7 comments
Labels: enhancement

#29 - Update rename_lncRNA_2.pl

Pull Request - State: closed - Opened by kodayu about 6 years ago

#29 - Update rename_lncRNA_2.pl

Pull Request - State: closed - Opened by kodayu about 6 years ago

#28 - Add per-process resource requests

Pull Request - State: closed - Opened by drejom about 6 years ago - 1 comment

#26 - Process `Run_LncPipeReporter (Generating report ...)` terminated with an error exit status (1)

Issue - State: closed - Opened by drejom about 6 years ago - 5 comments
Labels: enhancement

#26 - Process `Run_LncPipeReporter (Generating report ...)` terminated with an error exit status (1)

Issue - State: closed - Opened by drejom about 6 years ago - 5 comments
Labels: enhancement

#25 - Nextflow per-process resources

Issue - State: closed - Opened by drejom about 6 years ago - 9 comments
Labels: question

#25 - Nextflow per-process resources

Issue - State: closed - Opened by drejom about 6 years ago - 9 comments
Labels: question

#24 - Error initializing class

Issue - State: closed - Opened by sateeshperi about 6 years ago - 17 comments
Labels: possible bug, fixing

#24 - Error initializing class

Issue - State: closed - Opened by sateeshperi about 6 years ago - 17 comments
Labels: possible bug, fixing

#23 - Update LncRNAanalysisPipe.nf

Pull Request - State: closed - Opened by sateeshperi about 6 years ago

#22 - Update LncRNAanalysisPipe.nf

Pull Request - State: closed - Opened by sateeshperi about 6 years ago

#22 - Update LncRNAanalysisPipe.nf

Pull Request - State: closed - Opened by sateeshperi about 6 years ago

#21 - ERROR ~ No signature of method_Line_276 of .nf

Issue - State: closed - Opened by sateeshperi about 6 years ago - 3 comments

#21 - ERROR ~ No signature of method_Line_276 of .nf

Issue - State: closed - Opened by sateeshperi about 6 years ago - 3 comments

#20 - Update LncRNAanalysisPipe.nf

Pull Request - State: closed - Opened by kodayu about 6 years ago

#20 - Update LncRNAanalysisPipe.nf

Pull Request - State: closed - Opened by kodayu about 6 years ago

#19 - Update README.md

Pull Request - State: closed - Opened by venkan about 6 years ago - 2 comments

#19 - Update README.md

Pull Request - State: closed - Opened by venkan about 6 years ago - 2 comments

#18 - Update LncRNAanalysisPipe.nf

Pull Request - State: closed - Opened by sateeshperi about 6 years ago

#17 - Command error: .command.sh: line 3: htseq-count: command not found

Issue - State: closed - Opened by sateeshperi about 6 years ago - 2 comments
Labels: help wanted

#17 - Command error: .command.sh: line 3: htseq-count: command not found

Issue - State: closed - Opened by sateeshperi about 6 years ago - 2 comments
Labels: help wanted

#15 - Update LncRNAanalysisPipe.nf

Pull Request - State: closed - Opened by sateeshperi about 6 years ago

#14 - coding_abilities_by_CNCI?

Issue - State: closed - Opened by sateeshperi about 6 years ago - 3 comments

#13 - Update README.md

Pull Request - State: closed - Opened by sateeshperi about 6 years ago

#12 - lncRNA_Filtering_Criteria

Issue - State: closed - Opened by sateeshperi about 6 years ago - 1 comment

#11 - non_model_error_no_signature_of _method

Issue - State: closed - Opened by sateeshperi about 6 years ago - 3 comments
Labels: possible bug

#10 - Workflow_Image

Issue - State: closed - Opened by sateeshperi about 6 years ago - 3 comments
Labels: question

#9 - non_model_organisms_CPAT_logitModels

Issue - State: closed - Opened by sateeshperi over 6 years ago - 2 comments
Labels: enhancement

#8 - LncPipeReporter (Generating report ...)` terminated with an error exit status (1)

Issue - State: closed - Opened by sateeshperi over 6 years ago - 26 comments
Labels: bug, enhancement

#7 - Run_Kallisto_for_quantification terminated with an error exit status (137)

Issue - State: closed - Opened by sateeshperi over 6 years ago - 3 comments
Labels: question

#6 - singleend match error

Issue - State: closed - Opened by kodayu over 6 years ago - 1 comment

#5 - Todo list

Issue - State: open - Opened by likelet over 6 years ago - 3 comments
Labels: enhancement

#4 - cpatpath remove the ‘/’ at the end

Pull Request - State: closed - Opened by kodayu over 6 years ago

#3 - Use of uninitialized value error

Issue - State: closed - Opened by kodayu over 6 years ago - 2 comments
Labels: bug

#2 - ERROR ~ No such variable: readPairs_for_kallisto

Issue - State: closed - Opened by hovans almost 7 years ago - 1 comment
Labels: bug

#1 - A tiny suggestion for adding parameter in sambamba

Issue - State: closed - Opened by xiaoyufeixue almost 7 years ago - 1 comment
Labels: enhancement