Ecosyste.ms: Issues
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GitHub / libnano/primer3-py issues and pull requests
#143 - Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows
Pull Request -
State: open - Opened by dependabot[bot] 25 days ago
- 1 comment
Labels: dependencies
#142 - PRIMER_INTERNAL_MIN_TM and PRIMER_INTERNAL_MAX_TM setting raise Error
Issue -
State: closed - Opened by gudeqing about 2 months ago
#141 - Negative Tm with thermodynamic calculations
Issue -
State: closed - Opened by cesimsek 6 months ago
- 2 comments
#140 - Different default formamide concentration for `oligotm` and `primer3.calc_tm()`
Issue -
State: open - Opened by Reindertvc 7 months ago
- 2 comments
#139 - probably primer3_core:primer3/src/libprimer3/libprimer3flex.c:5894, assertion (sum >= 0.0) failed
Issue -
State: closed - Opened by sgujjaBebio 7 months ago
- 1 comment
#138 - @kevin2022lee it looks like you are trying to run the code on a Python 2.7 installation.
Issue -
State: closed - Opened by kevin2022lee 7 months ago
- 1 comment
#137 - AttributeError at /seqinput/ 'module' object has no attribute 'bindings'
Issue -
State: closed - Opened by kevin2022lee 7 months ago
- 4 comments
#136 - 2.0.3 release
Pull Request -
State: closed - Opened by benpruitt 8 months ago
#135 - Fix `_ThermoAnalysis._set_globals_and_seq_args` for improper checks on `misprime_lib` and `mishyb_lib`
Pull Request -
State: closed - Opened by grinner 8 months ago
#134 - Clarify how to replace setGlobals as of v1.0.0
Pull Request -
State: closed - Opened by peterjc 8 months ago
#133 - Replacement for primer3.primerdesign.setGlobals unclear
Issue -
State: closed - Opened by peterjc 8 months ago
- 11 comments
#132 - Highlight removal of camelCase aliases in v2.0.0
Pull Request -
State: closed - Opened by peterjc 8 months ago
- 2 comments
#131 - Update `cibuildwheel` to latest release for python 3.12 build support
Pull Request -
State: closed - Opened by benpruitt 8 months ago
#130 - 2.0.2 release
Pull Request -
State: closed - Opened by benpruitt 8 months ago
#129 - Support for python 3.12 (build, test, docs)
Pull Request -
State: closed - Opened by benpruitt 8 months ago
#128 - Issues installing on windows10 x86-64
Issue -
State: closed - Opened by lucienalperstein 8 months ago
- 4 comments
#127 - Installation of primer3-py via Conda on Python 3.8, 3.9, and 3.10
Issue -
State: closed - Opened by akikuno 9 months ago
- 16 comments
#126 - primer3.bindings.design_primers causes kernel crash
Issue -
State: closed - Opened by 25shmeckles 11 months ago
- 5 comments
#125 - primer3.design_primers -> primer3.designPrimers
Issue -
State: closed - Opened by Lcarey about 1 year ago
- 2 comments
#124 - 2.0.1 release
Pull Request -
State: closed - Opened by benpruitt about 1 year ago
#123 - Fix ``todict`` method of ``Thermoanalysis`` and add unit test coverage
Pull Request -
State: closed - Opened by benpruitt about 1 year ago
#122 - minor bug in primer3/thermoanalysis.pyx
Issue -
State: closed - Opened by martinfthomsen about 1 year ago
- 1 comment
#121 - calc_heterodimer fails on longer sequences
Issue -
State: closed - Opened by martinfthomsen about 1 year ago
- 2 comments
#120 - import errors when testing
Issue -
State: closed - Opened by doronbehar about 1 year ago
- 2 comments
#119 - fix c99 limit building problem
Pull Request -
State: open - Opened by liuxiawei about 1 year ago
- 3 comments
#118 - Missing space in change-log
Pull Request -
State: closed - Opened by peterjc about 1 year ago
#117 - cannot import name 'thermoanalysis'
Issue -
State: closed - Opened by ericeric0101 about 1 year ago
- 3 comments
#116 - Removed output dictionary keys?
Issue -
State: closed - Opened by DNAanalytics about 1 year ago
- 7 comments
#115 - calc tm breaks with lower case input
Issue -
State: closed - Opened by Tim-Kirkwood over 1 year ago
- 1 comment
#114 - (v0.6.1) Bindings fail in python 3.10?
Issue -
State: closed - Opened by kvertacnik over 1 year ago
- 2 comments
#113 - 2.0.0 release
Pull Request -
State: closed - Opened by grinner over 1 year ago
- 1 comment
#112 - Hotfix `recalc_primer_sec_struct` missing `thal_result.sec_struct` initialization to `NULL`
Pull Request -
State: closed - Opened by grinner over 1 year ago
#111 - Error:free(): invalid pointer
Issue -
State: closed - Opened by liuzy2008 over 1 year ago
- 5 comments
#110 - Nested structure for primer results
Pull Request -
State: closed - Opened by grinner over 1 year ago
#109 - hot fix for missing assignment of `no_structure` when structure is not found
Pull Request -
State: closed - Opened by grinner over 1 year ago
#108 - calc_hairpin() `structure_found == True` even no hairpin structure?
Issue -
State: closed - Opened by GuoYu-Peng over 1 year ago
- 1 comment
#107 - max_loop has no effect or am I understanding wrong?
Issue -
State: closed - Opened by GuoYu-Peng over 1 year ago
- 1 comment
#106 - Design output dictionary related bug fixes
Pull Request -
State: closed - Opened by benpruitt over 1 year ago
#105 - calc_hairpin() returns all possible results and add min_loop params?
Issue -
State: closed - Opened by GuoYu-Peng over 1 year ago
- 2 comments
#104 - fix python dict conversion of design output in `thermoanalysis.pyx`
Pull Request -
State: closed - Opened by pessoa-am over 1 year ago
#103 - bug fixes for issue 101. `pdh_create_seq_lib` to correct missing (#102)
Pull Request -
State: closed - Opened by grinner over 1 year ago
#102 - bug fixes for issue 101. `pdh_create_seq_lib` to bug fixes
Pull Request -
State: closed - Opened by grinner over 1 year ago
#101 - Giving a dict to `misprime_lib` causes `OSError`
Issue -
State: closed - Opened by jonathanronen over 1 year ago
- 2 comments
#100 - migrated primer3 header file Cython extern imports to `thermoanalysis.pxi`
Pull Request -
State: closed - Opened by grinner over 1 year ago
- 5 comments
#99 - setup.py error!!!!!!!!!!!!!!!!!!!!!!!!
Issue -
State: closed - Opened by kevin2022lee over 1 year ago
- 3 comments
#98 - 1.2.0 release
Pull Request -
State: closed - Opened by grinner over 1 year ago
#97 - Updated for 1.2.0 release info
Pull Request -
State: closed - Opened by grinner over 1 year ago
#96 - `ThermalAnalysis.run_design` is now thread-safe
Pull Request -
State: closed - Opened by grinner over 1 year ago
#95 - Building the sdist fails as header is missing : v1.1.0
Issue -
State: closed - Opened by ccoulombe over 1 year ago
- 3 comments
#94 - thread-safe `thal.c` code and `nogil` updates for `ThermoAnalysis`
Pull Request -
State: closed - Opened by grinner over 1 year ago
#93 - `p3helpers.pyx` houses new sequence and design helper functions
Pull Request -
State: closed - Opened by grinner over 1 year ago
#92 - `setup.py` `package_data` and `MANIFEST.in` updated to reflect package data for conda build from PyPi
Pull Request -
State: closed - Opened by grinner over 1 year ago
#91 - 1.1.0 release
Pull Request -
State: closed - Opened by grinner over 1 year ago
#90 - Version bump to 1.1.0 and `CHANGES` update
Pull Request -
State: closed - Opened by grinner over 1 year ago
#89 - python 3.8 wheel support
Pull Request -
State: closed - Opened by grinner over 1 year ago
#88 - Wheels for python 3.8
Issue -
State: closed - Opened by elliot-hallmark over 1 year ago
- 1 comment
#87 - added specificity to error non-N IUPAC error for issue 59
Pull Request -
State: closed - Opened by grinner over 1 year ago
#86 - Removed `conda install` instructions in `quickstart.md` and fix typo
Pull Request -
State: closed - Opened by grinner over 1 year ago
#85 - v1.0.0 `__version__` update
Pull Request -
State: closed - Opened by grinner over 1 year ago
#84 - 1.0.0 version update
Pull Request -
State: closed - Opened by grinner over 1 year ago
#83 - `CHANGES` finalization for 1.0.0 release. Markdown badge fixes in `README.md`
Pull Request -
State: closed - Opened by grinner over 1 year ago
#82 - Fix PyPi Python build version
Pull Request -
State: closed - Opened by benpruitt over 1 year ago
#81 - `build-wheels-pypi.yml` added to build wheels and upload to PyPi on tagging
Pull Request -
State: closed - Opened by grinner over 1 year ago
#80 - `MANIFEST` file update to ensure build and that files are not missing
Pull Request -
State: closed - Opened by grinner over 1 year ago
#79 - Misc. documentation + import fixes
Pull Request -
State: closed - Opened by benpruitt over 1 year ago
#78 - Windows test compatibility
Pull Request -
State: closed - Opened by benpruitt over 1 year ago
#77 - Added `examples/` folder with 2 sample modules
Pull Request -
State: closed - Opened by grinner over 1 year ago
- 1 comment
#76 - Fix windows build
Pull Request -
State: closed - Opened by benpruitt over 1 year ago
#75 - documentation updates pass 2 for `1.0.0-staging`
Pull Request -
State: closed - Opened by grinner over 1 year ago
#74 - Test coverage improvements
Pull Request -
State: closed - Opened by benpruitt over 1 year ago
#73 - docs update for 1.0.0 and conversion from Sphinx ReST to MyST
Pull Request -
State: closed - Opened by grinner over 1 year ago
#72 - code clarity and comments update. `*_main.c` argument parsing fixes
Pull Request -
State: closed - Opened by grinner over 1 year ago
#71 - Added `test_ntthal_io` to test conformity and validity of `primer3-py` changes to `thal.c`
Pull Request -
State: closed - Opened by grinner over 1 year ago
#70 - merged `primerdesign.pyx` into `thermoanalysis.pyx`.
Pull Request -
State: closed - Opened by grinner over 1 year ago
#69 - updates for `primer3` 2.6.1 and c-API code to `cython` module conversion for `primerdesign`
Pull Request -
State: closed - Opened by grinner over 1 year ago
#68 - `kw_only` dataclass fix primer3 py arguments
Pull Request -
State: closed - Opened by grinner over 1 year ago
#67 - Remove `PRIMER3HOME` in favor of package-relative paths
Pull Request -
State: closed - Opened by benpruitt over 1 year ago
#66 - Unify global defaults in new `argdefaults.py` module.
Pull Request -
State: closed - Opened by grinner over 1 year ago
#65 - type hinting, `cython` style update, `pre-commit` `mypy`
Pull Request -
State: closed - Opened by grinner over 1 year ago
#64 - `isort` added to `pre-commit` hooks
Pull Request -
State: closed - Opened by grinner over 1 year ago
#63 - `pre-commit` hooks initial and GitHub Action transition from Travis
Pull Request -
State: closed - Opened by grinner over 1 year ago
#62 - add .whl files for python 3.9 and 3.10 in windows
Issue -
State: closed - Opened by wpwupingwp almost 2 years ago
- 1 comment
#61 - How to know which part is the hairpin sequence?
Issue -
State: closed - Opened by yangtcai almost 2 years ago
- 1 comment
#60 - Cannot input list of ranges
Issue -
State: closed - Opened by danfulop almost 2 years ago
- 1 comment
#59 - Message "Unrecognized base in input sequence" omits problem char
Issue -
State: closed - Opened by peterjc about 2 years ago
- 2 comments
#58 - Wheels for python 3.9+
Issue -
State: closed - Opened by JacobHayes about 2 years ago
- 2 comments
#57 - Can `primer3-py` support the degenerate base design ?
Issue -
State: closed - Opened by kevin2022lee about 2 years ago
- 8 comments
#56 - primer3 2.6.0 feature
Issue -
State: closed - Opened by sanjaynagi about 2 years ago
- 1 comment
#55 - bad link in quickstart documentation
Issue -
State: closed - Opened by diekhans over 2 years ago
- 1 comment
#54 - Fix typo
Pull Request -
State: closed - Opened by peterjc over 2 years ago
- 1 comment
#53 - ctypes version is a little faster
Issue -
State: closed - Opened by chenzhiw over 2 years ago
- 3 comments
#52 - Mispriming library causes primer3-py to crash
Issue -
State: closed - Opened by danxfreeman over 2 years ago
- 3 comments
#51 - SEQUENCE_OVERLAP_JUNCTION_LIST
Issue -
State: closed - Opened by juechenyang almost 3 years ago
- 3 comments
#50 - Nested structure for primer results
Issue -
State: closed - Opened by peterjc over 3 years ago
- 6 comments
#49 - primer3 moved from sourceforge to GitHub
Issue -
State: closed - Opened by peterjc over 3 years ago
- 5 comments
#48 - Update to 2.5.0
Pull Request -
State: closed - Opened by jsnedeco over 3 years ago
- 2 comments
#47 - Documentation issues
Issue -
State: closed - Opened by InvisOn over 3 years ago
- 1 comment
#46 - add calcEndStability to __init__.py
Issue -
State: closed - Opened by stephen-tanner over 3 years ago
- 1 comment
#45 - Fix minor typo: pervious -> previous
Pull Request -
State: closed - Opened by hartzell over 3 years ago
- 1 comment
#44 - Different dimers from ntthal
Issue -
State: closed - Opened by billzt almost 4 years ago
- 1 comment