Ecosyste.ms: Issues

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GitHub / lh3/minipileup issues and pull requests

#15 - ALT counts

Issue - State: open - Opened by SamKalandarov 8 months ago

#14 - REF allele or missing

Issue - State: closed - Opened by baozg 8 months ago - 1 comment
Labels: question

#13 - QUAL in vcf seems the variant count?

Issue - State: closed - Opened by baozg 8 months ago - 1 comment
Labels: enhancement, question

#12 - non diploid organisms

Issue - State: closed - Opened by SamKalandarov 8 months ago - 1 comment
Labels: question

#11 - phasing of minipileup vcf file

Issue - State: closed - Opened by ScarlettPegany 9 months ago - 1 comment
Labels: question

#10 - Minipileup algorithm

Issue - State: closed - Opened by saassli21 9 months ago - 2 comments
Labels: question

#9 - utilities

Issue - State: closed - Opened by SueFletcher 9 months ago - 1 comment
Labels: question

#8 - set ploidy value

Issue - State: closed - Opened by DaliBAmor 10 months ago - 1 comment
Labels: question

#7 - Extraction of information from VCF file

Issue - State: closed - Opened by QuentinPerriere 10 months ago - 2 comments
Labels: question

#6 - `overlaps-removal` for pair end reads

Issue - State: open - Opened by y9c 10 months ago
Labels: enhancement

#5 - minipileup installation

Issue - State: closed - Opened by emilydolivo97 10 months ago - 1 comment
Labels: question

#4 - minipileup

Issue - State: closed - Opened by emilydolivo97 10 months ago - 1 comment
Labels: question

#2 - Super cool tool! Just noticed though that -y overrides user set values for -a and -s and -q and -Q

Issue - State: closed - Opened by jelber2 10 months ago - 7 comments
Labels: enhancement

#1 - bam list support

Issue - State: open - Opened by xiekunwhy 10 months ago - 3 comments
Labels: enhancement