Ecosyste.ms: Issues

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GitHub / lh3/gfatools issues and pull requests

#36 - gfa-server: Add support for Unix domain sockets

Pull Request - State: open - Opened by 0xaf1f 6 months ago

#35 - gfa2fa - what happens when using the -s flag

Issue - State: open - Opened by mb47 6 months ago

#33 - gfatools view to subset a gfa file

Issue - State: open - Opened by Dkyuan over 1 year ago - 2 comments

#32 - Online GfaViewer on gfaServer

Issue - State: closed - Opened by hcsun1 over 1 year ago - 5 comments
Labels: question

#31 - The question about format of fasta using gfatoos gfa2fa

Issue - State: open - Opened by Daishoulu over 1 year ago

#30 - Using `gfatools asm`

Issue - State: open - Opened by aafshinfard almost 2 years ago

#29 - How to convert fastG to GFA?

Issue - State: open - Opened by tarunaaggarwal about 2 years ago

#26 - "A" line produced by gfatools asm

Issue - State: open - Opened by yatsukha over 2 years ago

#25 - Invalid GAF is produced

Issue - State: open - Opened by asl over 2 years ago - 1 comment

#24 - Mayhem

Pull Request - State: closed - Opened by jacobclemente over 2 years ago

#23 - conversion of GFA to rGFA

Issue - State: open - Opened by gsc74 almost 3 years ago - 4 comments

#21 - About "--bf" the bloom filter

Issue - State: closed - Opened by cyr20040123 over 3 years ago

#20 - GFA2 format from miniasm not properly converting to fasta

Issue - State: closed - Opened by Sandman2127 over 3 years ago - 1 comment

#19 - can I convert single line path from complex structures into fasta files

Issue - State: closed - Opened by zhoudreames over 3 years ago - 1 comment

#18 - Fix SQL glitches in INSERT INTO {seg,arg} when rank is 0

Pull Request - State: closed - Opened by zwets about 4 years ago - 1 comment

#17 - Add a License

Issue - State: open - Opened by natir about 4 years ago - 4 comments

#16 - Is there support for translation between stable coordinate and segment/local coordinate for GAF?

Issue - State: open - Opened by SHuang-Broad about 4 years ago - 1 comment
Labels: question

#15 - gfa view subgraph radius definition

Issue - State: closed - Opened by ggonnella over 4 years ago - 4 comments
Labels: bug

#14 - blacklisting region from a region file

Issue - State: open - Opened by chklopp over 4 years ago

#13 - Fields in bubble output

Issue - State: closed - Opened by egoltsman over 4 years ago - 1 comment
Labels: question

#12 - Format clarification

Issue - State: closed - Opened by fbemm over 4 years ago - 2 comments
Labels: question

#11 - paths from rGFA

Issue - State: closed - Opened by egoltsman almost 5 years ago - 4 comments
Labels: question

#10 - Cigar strings altered after extracting subgraph

Issue - State: open - Opened by rlorigro almost 5 years ago

#9 - Lost segment sequences while producing unitigs

Issue - State: open - Opened by snurk about 5 years ago - 1 comment
Labels: enhancement

#8 - Logic of taking the subset within a given radius

Issue - State: closed - Opened by snurk about 5 years ago - 8 comments
Labels: question

#7 - Bug in producing unitig graph

Issue - State: open - Opened by snurk about 5 years ago

#6 - Subgraph option question

Issue - State: closed - Opened by snurk about 5 years ago - 1 comment
Labels: question

#5 - Bug in bubble popping algorithm

Issue - State: closed - Opened by snurk about 5 years ago - 1 comment
Labels: enhancement

#4 - Conflicting types when running make

Issue - State: closed - Opened by MBMumphrey over 5 years ago - 1 comment
Labels: bug

#3 - Standalone libraries to work with GFA

Issue - State: open - Opened by lh3 over 5 years ago - 4 comments
Labels: discussion

#2 - Defining Walk/W-lines in GFA1

Issue - State: open - Opened by lh3 over 5 years ago - 19 comments
Labels: discussion

#1 - rGFA vs vg's path model

Issue - State: closed - Opened by lh3 over 5 years ago - 4 comments
Labels: discussion