Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / lgatto/msnbase issues and pull requests

#605 - feat: add function to coerce from Spectra to MSpectra

Pull Request - State: closed - Opened by jorainer about 2 months ago - 2 comments

#604 - mode = "inMemory" fails when msLevel. = 1:2

Issue - State: closed - Opened by stanstrup 3 months ago - 3 comments

#602 - fix: disable nested parallel processing for chromatograms

Pull Request - State: closed - Opened by jorainer 6 months ago - 3 comments

#601 - Unable to open mzdata.xml

Issue - State: closed - Opened by XiaoleiOceano 7 months ago - 2 comments

#600 - refactor: move XML to Suggests

Pull Request - State: closed - Opened by jorainer 8 months ago - 3 comments

#598 - Error in .mzRBackendFromContent(x) : Could not determine file type

Issue - State: closed - Opened by MCK-sketch 11 months ago - 15 comments

#598 - Error in .mzRBackendFromContent(x) : Could not determine file type

Issue - State: closed - Opened by MCK-sketch 11 months ago - 12 comments

#597 - MSnbase data processing problem

Issue - State: closed - Opened by FaKeTaoT about 1 year ago - 4 comments

#597 - MSnbase data processing problem

Issue - State: closed - Opened by FaKeTaoT about 1 year ago - 4 comments

#596 - Error with readMzIdData on Comet output

Issue - State: closed - Opened by 524D about 1 year ago - 2 comments

#596 - Error with readMzIdData on Comet output

Issue - State: closed - Opened by 524D about 1 year ago - 2 comments

#595 - `R CMD check` failure on Linux ARM64

Issue - State: closed - Opened by martin-g about 1 year ago - 16 comments

#595 - `R CMD check` failure on Linux ARM64

Issue - State: closed - Opened by martin-g about 1 year ago - 16 comments

#593 - Fix declarations of centroided/smoothed setters for OnDiskMSnExp objects

Pull Request - State: closed - Opened by hpages over 1 year ago - 3 comments

#593 - Fix declarations of centroided/smoothed setters for OnDiskMSnExp objects

Pull Request - State: closed - Opened by hpages over 1 year ago - 3 comments

#592 - Unable to import MRM mzML files

Issue - State: closed - Opened by yeesherman over 1 year ago - 9 comments

#592 - Unable to import MRM mzML files

Issue - State: closed - Opened by yeesherman over 1 year ago - 9 comments

#591 - Issue in reading MRM files

Issue - State: closed - Opened by ChemoSens over 1 year ago - 4 comments

#591 - Issue in reading MRM files

Issue - State: closed - Opened by ChemoSens over 1 year ago - 4 comments

#590 - Read Bruker Tims data MSnbase error

Issue - State: closed - Opened by yguitton over 1 year ago - 5 comments

#590 - Read Bruker Tims data MSnbase error

Issue - State: closed - Opened by yguitton over 1 year ago - 5 comments

#589 - duplicated rows resulted in error

Issue - State: closed - Opened by ibphuangchen over 1 year ago - 1 comment

#589 - duplicated rows resulted in error

Issue - State: closed - Opened by ibphuangchen over 1 year ago - 1 comment

#588 - ERROR in reading GC×GC netCDF files

Issue - State: closed - Opened by SONGKai-PKU over 1 year ago - 4 comments

#587 - Problem with "too large halfWindowSize" with writeMSdata after centroiding MSe data

Issue - State: closed - Opened by cwegler almost 2 years ago - 3 comments

#587 - Problem with "too large halfWindowSize" with writeMSdata after centroiding MSe data

Issue - State: closed - Opened by cwegler almost 2 years ago - 3 comments

#586 - Fix for Issue #583

Pull Request - State: closed - Opened by Pascallio almost 2 years ago - 4 comments

#586 - Fix for Issue #583

Pull Request - State: closed - Opened by Pascallio almost 2 years ago - 4 comments

#585 - removing non-proteotypic peptide

Issue - State: open - Opened by ibphuangchen almost 2 years ago

#585 - removing non-proteotypic peptide

Issue - State: open - Opened by ibphuangchen almost 2 years ago

#584 - error in "addIdentificationData"

Issue - State: closed - Opened by ibphuangchen almost 2 years ago - 4 comments

#584 - error in "addIdentificationData"

Issue - State: closed - Opened by ibphuangchen almost 2 years ago - 4 comments

#583 - Possible bug in descendPeaks

Issue - State: closed - Opened by Pascallio about 2 years ago - 3 comments

#583 - Possible bug in descendPeaks

Issue - State: closed - Opened by Pascallio about 2 years ago - 3 comments

#582 - Trouble with MSnbase's writeMSData function

Issue - State: closed - Opened by calstevemart about 2 years ago - 1 comment

#582 - Trouble with MSnbase's writeMSData function

Issue - State: closed - Opened by calstevemart about 2 years ago - 1 comment

#581 - chromatogram() automatically adjusts mz range & rt range

Issue - State: closed - Opened by pablovgd about 2 years ago - 2 comments

#581 - chromatogram() automatically adjusts mz range & rt range

Issue - State: closed - Opened by pablovgd about 2 years ago - 2 comments

#580 - Why readMSData function was so slow when reading mzML file?

Issue - State: closed - Opened by HongxiangXu about 2 years ago - 1 comment

#580 - Why readMSData function was so slow when reading mzML file?

Issue - State: closed - Opened by HongxiangXu about 2 years ago - 1 comment

#579 - Installation failed on Apple Silicon Macbook & R 4.2.1

Issue - State: closed - Opened by lingjuewang over 2 years ago - 2 comments

#579 - Installation failed on Apple Silicon Macbook & R 4.2.1

Issue - State: closed - Opened by lingjuewang over 2 years ago - 2 comments

#578 - Is it possible to split the chromatograms from multiple files

Issue - State: closed - Opened by MuyaoXi9271 over 2 years ago - 9 comments

#577 - ‘MSnbase.so’ not found

Issue - State: closed - Opened by cyan20200410 over 2 years ago - 2 comments

#577 - ‘MSnbase.so’ not found

Issue - State: closed - Opened by cyan20200410 over 2 years ago - 2 comments

#576 - readMSData function on mzXML file format

Issue - State: closed - Opened by Marievlm over 2 years ago - 3 comments

#576 - readMSData function on mzXML file format

Issue - State: closed - Opened by Marievlm over 2 years ago - 3 comments

#575 - CentWaveParam error

Issue - State: closed - Opened by cyan20200410 over 2 years ago - 1 comment

#575 - CentWaveParam error

Issue - State: closed - Opened by cyan20200410 over 2 years ago - 1 comment

#574 - Code refactoring

Issue - State: closed - Opened by lgatto over 2 years ago

#574 - Code refactoring

Issue - State: closed - Opened by lgatto over 2 years ago

#573 - Mz of fragments with neutral losses

Issue - State: closed - Opened by nbisliuk over 2 years ago - 2 comments
Labels: bug

#573 - Mz of fragments with neutral losses

Issue - State: closed - Opened by nbisliuk over 2 years ago - 2 comments
Labels: bug

#572 - Change the unit of retention time from minute to second

Issue - State: closed - Opened by MuyaoXi9271 over 2 years ago - 6 comments

#572 - Change the unit of retention time from minute to second

Issue - State: closed - Opened by MuyaoXi9271 over 2 years ago - 6 comments

#571 - Allow different orientation of axis labels in image2

Pull Request - State: closed - Opened by lmsimp over 2 years ago - 2 comments

#571 - Allow different orientation of axis labels in image2

Pull Request - State: closed - Opened by lmsimp over 2 years ago - 2 comments

#570 - Merging Individual Specta

Issue - State: closed - Opened by BadAtComputerGuy almost 3 years ago - 2 comments

#570 - Merging Individual Specta

Issue - State: closed - Opened by BadAtComputerGuy almost 3 years ago - 2 comments

#569 - fix: adapt to mzR version 2.29.3

Pull Request - State: closed - Opened by jorainer almost 3 years ago - 5 comments

#569 - fix: adapt to mzR version 2.29.3

Pull Request - State: closed - Opened by jorainer almost 3 years ago - 5 comments

#568 - MRM Analysis Help

Issue - State: closed - Opened by jamesrgraham almost 3 years ago - 10 comments

#568 - MRM Analysis Help

Issue - State: closed - Opened by jamesrgraham almost 3 years ago - 10 comments

#567 - Add transformIntensity method for Chromatogram data

Pull Request - State: closed - Opened by jorainer almost 3 years ago

#567 - Add transformIntensity method for Chromatogram data

Pull Request - State: closed - Opened by jorainer almost 3 years ago

#566 - Error msg while using 'combineSpectra'

Issue - State: closed - Opened by cyan20200410 almost 3 years ago - 10 comments

#566 - Error msg while using 'combineSpectra'

Issue - State: closed - Opened by cyan20200410 almost 3 years ago - 10 comments

#565 - Update README.md

Pull Request - State: closed - Opened by Adafede almost 3 years ago - 1 comment

#565 - Update README.md

Pull Request - State: closed - Opened by Adafede almost 3 years ago - 1 comment

#564 - Error with parellelization on R 4.1

Issue - State: closed - Opened by agnesblch almost 3 years ago - 4 comments

#564 - Error with parellelization on R 4.1

Issue - State: closed - Opened by agnesblch almost 3 years ago - 4 comments

#563 - MSnbase Installation problems (R R 3.6.3)

Issue - State: closed - Opened by dplazas almost 3 years ago - 3 comments

#563 - MSnbase Installation problems (R R 3.6.3)

Issue - State: closed - Opened by dplazas almost 3 years ago - 3 comments

#562 - fix: fix issue in compareChromatograms

Pull Request - State: closed - Opened by jorainer almost 3 years ago - 5 comments

#562 - fix: fix issue in compareChromatograms

Pull Request - State: closed - Opened by jorainer almost 3 years ago - 5 comments

#561 - Check error on Bioc servers

Issue - State: closed - Opened by lgatto almost 3 years ago - 3 comments

#561 - Check error on Bioc servers

Issue - State: closed - Opened by lgatto almost 3 years ago - 3 comments

#560 - fix: ensure similarity matrix of compareChromatograms is symmetric

Pull Request - State: closed - Opened by jorainer almost 3 years ago

#560 - fix: ensure similarity matrix of compareChromatograms is symmetric

Pull Request - State: closed - Opened by jorainer almost 3 years ago

#559 - Error in `sampleNames<-`(`*tmp*`, value = value)

Issue - State: closed - Opened by Jasper472 almost 3 years ago - 3 comments

#559 - Error in `sampleNames<-`(`*tmp*`, value = value)

Issue - State: closed - Opened by Jasper472 almost 3 years ago - 3 comments

#558 - Error in retention time vector generated by MSmap

Issue - State: closed - Opened by Lasseeli almost 3 years ago - 1 comment

#558 - Error in retention time vector generated by MSmap

Issue - State: closed - Opened by Lasseeli almost 3 years ago - 1 comment

#557 - Enable "fast load" also on macOS

Pull Request - State: closed - Opened by jorainer almost 3 years ago - 2 comments

#557 - Enable "fast load" also on macOS

Pull Request - State: closed - Opened by jorainer almost 3 years ago - 2 comments

#556 - Extract chromatogram object(s) from mzML Data

Issue - State: closed - Opened by bathmer almost 3 years ago - 2 comments

#556 - Extract chromatogram object(s) from mzML Data

Issue - State: closed - Opened by bathmer almost 3 years ago - 2 comments

#555 - General help quantitation

Issue - State: closed - Opened by Lasseeli about 3 years ago - 1 comment

#555 - General help quantitation

Issue - State: closed - Opened by Lasseeli about 3 years ago - 1 comment

#554 - unable to find multiple peaks in chromatogram objects by readSRMdata

Issue - State: closed - Opened by YANGJJ93research about 3 years ago - 3 comments

#554 - unable to find multiple peaks in chromatogram objects by readSRMdata

Issue - State: closed - Opened by YANGJJ93research about 3 years ago - 3 comments

#553 - error writing mzML file

Issue - State: closed - Opened by ricoderks about 3 years ago - 3 comments

#553 - error writing mzML file

Issue - State: closed - Opened by ricoderks about 3 years ago - 3 comments

#552 - recalibration

Issue - State: open - Opened by ricoderks about 3 years ago - 4 comments

#552 - recalibration

Issue - State: open - Opened by ricoderks about 3 years ago - 4 comments