Ecosyste.ms: Issues

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GitHub / leylabmpi/resmico issues and pull requests

#35 - contig_frac parameter in YAML config file for ResMiCo-SM

Issue - State: closed - Opened by mudamaid62 7 months ago - 1 comment

#34 - bam2feat error: Return code -11

Issue - State: closed - Opened by AroneyS 8 months ago - 6 comments

#33 - How to train ResMiCo on my own dataset?

Issue - State: closed - Opened by Dylan1021 10 months ago - 4 comments

#32 - Training / testing dataset

Issue - State: closed - Opened by Dylan1021 about 1 year ago - 5 comments

#31 - Could not create cudnn handle: CUDNN_STATUS_NOT_INITIALIZED

Issue - State: open - Opened by atyakhtmpg about 1 year ago - 1 comment

#30 - Resmico tests fail and more

Issue - State: open - Opened by ponomarevsy over 1 year ago - 2 comments

#28 - Error with resmico evaluate: OSError: [Errno 9] Bad file descriptor

Issue - State: open - Opened by Yunliang81 almost 2 years ago - 5 comments

#27 - AttributeError: module 'numpy' has no attribute 'bool'. resmico evaluate

Issue - State: closed - Opened by Yunliang81 almost 2 years ago - 2 comments

#26 - Could not load dynamic library "libcudnn.so.8"

Issue - State: closed - Opened by Yunliang81 almost 2 years ago - 4 comments

#25 - resmico bam2feat Error (ValueError: Return code: -11)

Issue - State: closed - Opened by Yunliang81 almost 2 years ago

#24 - Samtools index on bam in resmico-bam2feat_TMP

Issue - State: closed - Opened by roachjm-unc about 2 years ago - 3 comments

#23 - Fix crash when processing unmapped reads in bam2feat

Pull Request - State: closed - Opened by danieldanciu about 2 years ago - 1 comment

#22 - segfault in bam2feat ?

Issue - State: closed - Opened by roachjm-unc about 2 years ago - 5 comments

#21 - Missing samtools/Incompatible OpenSSL

Issue - State: open - Opened by ohickl about 2 years ago - 5 comments

#20 - added .gitpod setup

Pull Request - State: closed - Opened by nick-youngblut over 2 years ago

#19 - ResMiCo on scaffolds?

Issue - State: open - Opened by GeoMicroSoares over 2 years ago - 1 comment

#18 - Support new network: 'cnn_resnet_argmax'

Pull Request - State: closed - Opened by danieldanciu almost 3 years ago

#16 - Mask average pooling layer

Pull Request - State: closed - Opened by danieldanciu about 3 years ago

#15 - Support evaluation based on binary data

Pull Request - State: closed - Opened by danieldanciu about 3 years ago

#14 - Translation invariance

Pull Request - State: closed - Opened by danieldanciu about 3 years ago

#13 - Make sure that breakpoint is in the random sub-contig for long contigs

Pull Request - State: closed - Opened by danieldanciu about 3 years ago

#12 - Invariance to base swap; ResMiCo->resmico

Pull Request - State: closed - Opened by danieldanciu about 3 years ago

#8 - Cache all data in memory

Pull Request - State: closed - Opened by danieldanciu about 3 years ago

#7 - Optimizations for batch generation

Pull Request - State: closed - Opened by danieldanciu about 3 years ago

#6 - Fix github workflow for Conda-based tests

Pull Request - State: closed - Opened by danieldanciu about 3 years ago

#4 - Add variation to the interval around the breaking point

Pull Request - State: closed - Opened by danieldanciu about 3 years ago

#3 - Binary data in Python + Use jsonh to create json stats

Pull Request - State: closed - Opened by danieldanciu about 3 years ago

#2 - Group by contig rather than by column. Support for breaking points.

Pull Request - State: closed - Opened by danieldanciu about 3 years ago

#1 - Add support for compressed columns and merge misassembly information

Pull Request - State: closed - Opened by danieldanciu about 3 years ago