Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / levitsky/pyteomics issues and pull requests

#43 - Addition of spectrum_utils backend

Pull Request - State: closed - Opened by levitsky about 3 years ago - 1 comment

#42 - mzTab conversion to dataframe

Issue - State: closed - Opened by eeko-kon about 3 years ago - 2 comments

#41 - Merge read optimizations

Pull Request - State: closed - Opened by mobiusklein about 3 years ago - 1 comment

#40 - mzML vs mzMLb vs mzXML

Issue - State: open - Opened by sorenwacker about 3 years ago - 9 comments

#39 - OSError: [Errno 12] Cannot allocate memory

Issue - State: closed - Opened by hugokitano about 3 years ago - 2 comments

#38 - Improve mzMLb read performance with array cache

Pull Request - State: closed - Opened by mobiusklein about 3 years ago - 8 comments

#37 - Draft ProForma implementation

Pull Request - State: closed - Opened by mobiusklein over 3 years ago - 5 comments

#36 - Add USI PROXI backend for ProteomeExchange

Pull Request - State: closed - Opened by mobiusklein over 3 years ago - 7 comments

#35 - Draft mzmlb implementation

Pull Request - State: closed - Opened by mobiusklein over 3 years ago - 6 comments

#34 - Index additional tags for mzIdentML

Pull Request - State: closed - Opened by mobiusklein over 3 years ago - 9 comments

#33 - Pyteomics fails to parse mzId files with <Fragmentation> information

Issue - State: closed - Opened by jgriss over 3 years ago - 3 comments

#32 - Fix Unimod Compatibility With SQLAlchemy 1.4.X

Pull Request - State: closed - Opened by mobiusklein over 3 years ago - 1 comment

#31 - Unimod doesn't work with SQLAlchemy 1.4.2

Issue - State: closed - Opened by levitsky over 3 years ago - 1 comment

#27 - Handle missing mzTab-version header

Pull Request - State: closed - Opened by mobiusklein over 3 years ago - 1 comment

#26 - KeyError: 'mzTab-version' when loading PXD000001_mztab.txt

Issue - State: closed - Opened by PDiracDelta over 3 years ago - 4 comments

#25 - After using ms_data = mzxml.MzXML(filename) the file stays open on Windows.

Issue - State: closed - Opened by sorenwacker over 3 years ago - 4 comments

#24 - Fixed version parsing

Pull Request - State: closed - Opened by donnyyy777 over 3 years ago - 2 comments

#23 - Add automatic generation of metadata accessors

Pull Request - State: closed - Opened by mobiusklein over 3 years ago - 7 comments

#22 - Parsing mztab 2.0 sections in `MzTab`

Pull Request - State: closed - Opened by annalefarova over 3 years ago - 18 comments

#21 - Parsing mztab 2.0

Issue - State: closed - Opened by annalefarova over 3 years ago - 2 comments

#20 - Substitute the five predefined XML entities with their characters in ID strings

Pull Request - State: closed - Opened by mobiusklein over 3 years ago - 1 comment

#17 - Fix warning when overriding use_index

Pull Request - State: closed - Opened by paretje over 3 years ago - 1 comment

#16 - mgf.read ignores `use_index` if source is str (4.3.3)

Issue - State: closed - Opened by lars-kolbowski over 3 years ago - 1 comment

#15 - isoforms - partially undefined order of reported modified peptides

Issue - State: closed - Opened by lutzfischer over 3 years ago - 6 comments

#14 - Add pyteomics/version, remove VERSION file

Pull Request - State: closed - Opened by levitsky over 3 years ago - 3 comments

#13 - Add a __version__ method to pyteomics

Issue - State: closed - Opened by sugatoray over 3 years ago - 4 comments

#12 - Parse Annotated MGFs

Pull Request - State: closed - Opened by jmueller95 over 3 years ago - 7 comments

#11 - A minimal Universal Spectrum Identifier parser and PROXI client

Pull Request - State: closed - Opened by mobiusklein over 3 years ago - 3 comments

#10 - Fix xpath, improve pepxml.roc_curve()

Pull Request - State: closed - Opened by alephreish almost 4 years ago - 3 comments

#9 - GRAVY

Pull Request - State: closed - Opened by caetera about 4 years ago

#8 - Reading mztab failing

Issue - State: closed - Opened by ypriverol about 4 years ago - 1 comment

#7 - INSTALL and VERSION are missing in the sdist on PyPI

Issue - State: closed - Opened by sunpoet about 4 years ago - 2 comments

#3 - issues in mzTab when description of protein contains []

Issue - State: closed - Opened by ypriverol about 4 years ago - 3 comments

#2 - tandem is_decoy function

Issue - State: closed - Opened by tivdnbos about 4 years ago - 2 comments
Labels: question