Ecosyste.ms: Issues

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GitHub / lemieuxl/pyGenClean issues and pull requests

#27 - MemoryError when reading TPED

Issue - State: closed - Opened by jgrundstad about 6 years ago - 10 comments

#26 - Error in post-install test run

Issue - State: open - Opened by willmclaren almost 7 years ago - 3 comments

#25 - TypeError in remove_heterozygous_haploid, v1.8.1

Issue - State: closed - Opened by jgrundstad almost 8 years ago - 3 comments
Labels: bug

#24 - output message for marker/sample missingness indicates the opposite of what's calculated

Issue - State: closed - Opened by jgrundstad about 9 years ago - 1 comment
Labels: bug

#23 - pyGenClean ERROR duplicated_snps: ATGCATGC: unknown allele

Issue - State: open - Opened by jgrundstad about 9 years ago - 1 comment
Labels: enhancement

#22 - Update the documentation

Issue - State: closed - Opened by lemieuxl about 9 years ago
Labels: enhancement

#21 - Decrease image's dpi

Issue - State: closed - Opened by lemieuxl about 9 years ago
Labels: enhancement

#20 - Add a reason in the report for a subset

Issue - State: closed - Opened by lemieuxl about 9 years ago
Labels: enhancement

#19 - Scree plot is too long

Issue - State: closed - Opened by lemieuxl over 9 years ago - 2 comments
Labels: bug

#18 - Use of namedtuple for steps' results would be better

Issue - State: closed - Opened by lemieuxl over 9 years ago
Labels: enhancement

#17 - Bug in main pipeline

Issue - State: closed - Opened by lemieuxl over 9 years ago
Labels: bug

#16 - Genome file should be computed using autosomal markers only

Issue - State: closed - Opened by lemieuxl over 9 years ago - 3 comments
Labels: bug

#15 - Merging reports when directory ends with / fails

Issue - State: closed - Opened by lemieuxl over 9 years ago
Labels: bug

#14 - Using pyGenClean_find_outliers should update the automatic report

Issue - State: closed - Opened by lemieuxl over 9 years ago
Labels: enhancement

#13 - Windows, LaTeX and paths

Issue - State: closed - Opened by lemieuxl over 9 years ago
Labels: bug

#12 - Plate Bias - Wrong number of markers

Issue - State: closed - Opened by lemieuxl over 9 years ago
Labels: bug

#11 - Check ethnicity error

Issue - State: closed - Opened by lemieuxl over 9 years ago - 1 comment
Labels: bug

#10 - UnicodeDecodeError when unicode in paths

Issue - State: closed - Opened by lemieuxl over 9 years ago - 2 comments
Labels: bug

#9 - Related Samples - Automatic report

Issue - State: closed - Opened by lemieuxl over 9 years ago
Labels: enhancement

#8 - Gender Check - Automatic report

Issue - State: closed - Opened by lemieuxl over 9 years ago
Labels: enhancement

#7 - Plate Bias - List of markers

Issue - State: closed - Opened by lemieuxl over 9 years ago
Labels: enhancement

#6 - No scree plot in automatic report

Issue - State: closed - Opened by lemieuxl over 9 years ago
Labels: bug

#5 - Pipeline fails if no duplicated samples found

Issue - State: closed - Opened by lemieuxl over 9 years ago
Labels: bug

#4 - Pipeline fails if no duplicated markers found

Issue - State: closed - Opened by lemieuxl over 9 years ago
Labels: bug

#3 - Add bafRegress to evaluate contamination of samples

Issue - State: closed - Opened by provosts about 10 years ago
Labels: enhancement

#2 - compute PCA with EIGENSOFT (smartpca) on dataset only

Issue - State: closed - Opened by provosts about 10 years ago - 1 comment

#1 - Compute MDS only on dataset

Issue - State: closed - Opened by lemieuxl about 10 years ago - 1 comment
Labels: enhancement