Ecosyste.ms: Issues

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GitHub / leahkemp/pipeface issues and pull requests

#31 - Release v0.4.2

Pull Request - State: closed - Opened by leahkemp about 1 month ago
Labels: release

#30 - Input SV VCF

Pull Request - State: closed - Opened by leahkemp about 1 month ago
Labels: documentation, enhancement, bug fix

#29 - Handle creating NONE file within pipeline

Pull Request - State: closed - Opened by leahkemp about 1 month ago
Labels: enhancement, bug fix

#28 - Release v0.4.1

Pull Request - State: closed - Opened by leahkemp about 1 month ago
Labels: release

#27 - Fix clair3 no data_type bug

Pull Request - State: closed - Opened by leahkemp about 1 month ago
Labels: bug fix

#26 - No such variable data_type error when running clair3

Issue - State: closed - Opened by leahkemp about 1 month ago
Labels: bug

#25 - Release v0.4.0

Pull Request - State: closed - Opened by leahkemp about 2 months ago
Labels: release

#24 - Change output dir structure and simplify tuples

Pull Request - State: closed - Opened by leahkemp about 2 months ago
Labels: enhancement

#23 - Release v0.3.0

Pull Request - State: closed - Opened by leahkemp 2 months ago
Labels: release

#22 - SV annotation

Pull Request - State: closed - Opened by leahkemp 2 months ago
Labels: enhancement

#21 - Release v0.2.1

Pull Request - State: closed - Opened by leahkemp 2 months ago
Labels: release

#20 - Optimise the DeepVariant stage

Pull Request - State: closed - Opened by kisarur 3 months ago
Labels: enhancement

#19 - Release v0.2.0

Pull Request - State: closed - Opened by leahkemp 3 months ago
Labels: release

#18 - Whatshap stats

Pull Request - State: closed - Opened by leahkemp 3 months ago
Labels: enhancement

#17 - pb-CpG-tools

Pull Request - State: closed - Opened by leahkemp 3 months ago
Labels: enhancement

#16 - Bam or vcf input

Pull Request - State: closed - Opened by leahkemp 3 months ago
Labels: enhancement

#15 - Filter refcall

Pull Request - State: closed - Opened by leahkemp 3 months ago
Labels: enhancement

#14 - Mosdepth

Pull Request - State: closed - Opened by leahkemp 3 months ago
Labels: enhancement

#13 - Release v0.1.2

Pull Request - State: closed - Opened by leahkemp 4 months ago
Labels: release

#12 - SNP/indel annotation and simplify code/outputs

Pull Request - State: closed - Opened by leahkemp 4 months ago
Labels: enhancement

#11 - Implement deepvariant directly

Pull Request - State: closed - Opened by leahkemp 6 months ago - 1 comment
Labels: enhancement, bug fix

#10 - Simplify version recording

Pull Request - State: closed - Opened by leahkemp 6 months ago
Labels: documentation, enhancement

#9 - Documentation

Pull Request - State: closed - Opened by leahkemp 6 months ago
Labels: documentation

#8 - Overwrite of per read read group tags in aligned BAM

Issue - State: closed - Opened by leahkemp 6 months ago
Labels: bug

#7 - Issue processing input data without read group info

Issue - State: closed - Opened by leahkemp 6 months ago - 1 comment
Labels: bug

#6 - Release v0.1.1

Pull Request - State: closed - Opened by leahkemp 7 months ago
Labels: release

#5 - Check in data

Pull Request - State: closed - Opened by leahkemp 7 months ago
Labels: enhancement

#4 - Lighten minimap

Pull Request - State: closed - Opened by leahkemp 7 months ago
Labels: enhancement

#3 - Increase merge runs walltime

Pull Request - State: closed - Opened by leahkemp 7 months ago
Labels: bug fix

#2 - Fix reported SV caller when a single SV caller is selected

Pull Request - State: closed - Opened by leahkemp 7 months ago
Labels: bug fix

#1 - No such variable reported_sv_caller

Issue - State: closed - Opened by leahkemp 7 months ago
Labels: bug