Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / lcrawlab/mvMAPIT issues and pull requests

#113 - CRAN status badge

Pull Request - State: closed - Opened by jdstamp 4 months ago

#112 - MM-136 LT MAPIT support

Pull Request - State: closed - Opened by jdstamp 8 months ago

#111 - MM-120 fix Bonferroni correction

Pull Request - State: closed - Opened by jdstamp over 1 year ago

#108 - MM-116 new version for CRAN upload

Pull Request - State: closed - Opened by jdstamp over 1 year ago

#107 - additive snps for easy testing named accordingly

Pull Request - State: closed - Opened by jdstamp over 1 year ago

#106 - Mm 87 rcpp progress bar

Pull Request - State: closed - Opened by jdstamp over 1 year ago

#105 - Mm 115 causal sn ps should be named accordingly for easy analysis

Pull Request - State: closed - Opened by jdstamp over 1 year ago

#103 - Mm 112 update doi in cran description to point to g 3 article

Pull Request - State: closed - Opened by jdstamp over 1 year ago

#102 - Add downloads badge

Pull Request - State: closed - Opened by jdstamp almost 2 years ago

#101 - cauchy combined p-value method

Pull Request - State: closed - Opened by jdstamp almost 2 years ago

#99 - MM-98: follow testthat issue fix

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#98 - fixed tidyverse deprecation

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#97 - version upgrade for resubmission

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#96 - Mm 89 cran policy compatibility and submission cran

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#95 - MM-89: incorporate CRAN feedback

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#94 - missed changes.

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#93 - Update README.md

Pull Request - State: closed - Opened by lorinanthony about 2 years ago

#92 - MM-89: place holder for biorxiv

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#91 - MM-89: ORCID

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#90 - Mm 89 cran policy compatibility and submission

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#89 - Mm 80 rework vignette mk2

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#88 - any::pkgdown

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#87 - Update pkgdown.yaml

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#86 - setup-r@v2

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#85 - MM-94: add large files to build ignore file

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#84 - MM-93: downsize all data in package

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#83 - MM-93: downsize all data in package

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#82 - MM-92: Minor fixes

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#81 - MM-92: Phillips vignette

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#80 - Fix formatting

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#79 - MM-80: reworked articles

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#78 - MM-91: remove files that are not part of package

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#77 - MM-81: Updated README with latest introduction and dependencies

Pull Request - State: closed - Opened by jdstamp about 2 years ago

#76 - Create docker-image.yml

Pull Request - State: closed - Opened by jdstamp over 2 years ago

#75 - Replace configure scripts with Makevars file

Pull Request - State: closed - Opened by abidart over 2 years ago

#74 - MM-88 add windows build to the CI

Pull Request - State: closed - Opened by abidart over 2 years ago - 2 comments

#73 - run R CMD check on windows

Pull Request - State: closed - Opened by jdstamp over 2 years ago - 1 comment

#72 - Mm 86 provide docker container for ccv

Pull Request - State: closed - Opened by jdstamp over 2 years ago - 1 comment

#71 - MM-86: Dockerfile and instructions

Pull Request - State: closed - Opened by jdstamp over 2 years ago

#70 - NEWS.md is not shown in pkgdown pages

Pull Request - State: closed - Opened by jdstamp over 2 years ago

#69 - version 2.0.0 because interface change

Pull Request - State: closed - Opened by jdstamp over 2 years ago

#68 - gha for pkgdown

Pull Request - State: closed - Opened by jdstamp over 2 years ago

#67 - Mm 82 clean up docs

Pull Request - State: closed - Opened by jdstamp over 2 years ago

#66 - MM-82: Links in the Readme

Pull Request - State: closed - Opened by jdstamp over 2 years ago

#65 - Create deploy-docs.yml

Pull Request - State: closed - Opened by jdstamp over 2 years ago

#64 - Mm 82 create GitHub pages 2

Pull Request - State: closed - Opened by jdstamp over 2 years ago

#63 - MM-82: starting point github pages

Pull Request - State: closed - Opened by jdstamp over 2 years ago

#62 - reworked the combine method for mvMAPIT

Pull Request - State: closed - Opened by jdstamp over 2 years ago

#61 - MM-77-return-covariance-estimates

Pull Request - State: closed - Opened by jdstamp over 2 years ago

#60 - properties change when only one trait is run

Pull Request - State: closed - Opened by jdstamp over 2 years ago

#59 - latest was not installed, also MM-70

Pull Request - State: closed - Opened by jdstamp over 2 years ago

#58 - added params for H2, also MM-70

Pull Request - State: closed - Opened by jdstamp over 2 years ago

#57 - MM-69: simulate with varying heritability

Pull Request - State: closed - Opened by jdstamp almost 3 years ago

#56 - Mm 61 rework the output data according to tidy data standards

Pull Request - State: closed - Opened by jdstamp almost 3 years ago

#55 - MM-62: significant speed up

Pull Request - State: closed - Opened by jdstamp almost 3 years ago

#54 - MM-58: refactoring should save a lot of memory

Pull Request - State: closed - Opened by jdstamp almost 3 years ago

#53 - Mm 58 check if matrices only uses references instead of copying the matrices

Pull Request - State: closed - Opened by jdstamp almost 3 years ago

#52 - MM-51: remove kronecker occurences, test, rewrite davies part mk1

Pull Request - State: closed - Opened by jdstamp almost 3 years ago

#51 - Mm 50 tag last version with kronecker method

Pull Request - State: closed - Opened by jdstamp almost 3 years ago

#50 - MM-57: reset asap

Pull Request - State: closed - Opened by jdstamp almost 3 years ago

#49 - MM-56: remove Jenkins related scripts

Pull Request - State: closed - Opened by jdstamp almost 3 years ago

#48 - MM-55: Fix bug for zero size epistatic interactions

Pull Request - State: closed - Opened by jdstamp almost 3 years ago

#47 - MM-54: simulations pass tests

Pull Request - State: closed - Opened by jdstamp almost 3 years ago

#46 - Mm 52 combined p value fishers method mk2

Pull Request - State: closed - Opened by jdstamp almost 3 years ago

#45 - Mm 52 combined p value fishers method

Pull Request - State: closed - Opened by jdstamp almost 3 years ago

#44 - MM-52: provide code onwer for python file changes

Pull Request - State: closed - Opened by jdstamp almost 3 years ago

#43 - Create oscar.yml

Pull Request - State: closed - Opened by jdstamp almost 3 years ago

#42 - MM-48: updated simulation

Pull Request - State: closed - Opened by jdstamp about 3 years ago

#41 - MM-38: scale X matrix in code always

Pull Request - State: closed - Opened by jdstamp about 3 years ago

#40 - MM-45: NA for variants not in variantIndex

Pull Request - State: closed - Opened by jdstamp about 3 years ago

#39 - MM-44: remove unused function

Pull Request - State: closed - Opened by jdstamp about 3 years ago

#38 - MM-17: remove deprecated simulate.R

Pull Request - State: closed - Opened by jdstamp about 3 years ago

#37 - Mm 43/test mvmapit for identical phenotypes

Pull Request - State: closed - Opened by jdstamp about 3 years ago

#36 - MM-39: run mvMAPIT on data that was analyzed with the original MAPIT …

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#35 - MM-39: introduce combinatorial index matrix

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#34 - proper p-value computation normal method combinatorial

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#33 - MM-39: introduce bilinear variance

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#32 - MM-37: MvMAPIT function signature changes

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#31 - MM-35: parse input against options

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#30 - MM-22: updated README since code is working in general

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#29 - MM-32: check if Y is vector and transpose if TRUE

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#28 - Revert "MM-34: up version to v0.1.2"

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#27 - MM-34: up version to v0.1.2

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#26 - MM-34: use saddlepoint approximation if Davies fails

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#25 - Mm 33/discard unused matrices for reduced memory consumption

Pull Request - State: closed - Opened by jdstamp over 3 years ago - 1 comment

#24 - Mm 31/reproduce grant figure

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#23 - MM-28: change version to 0.1.0

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#22 - MM-28: change version to 0.0.2

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#21 - Mm 27/mvmapit return comprehensive naming of p values

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#20 - MM-26: tests for C!=NULL and davies error handling

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#19 - Mm 23/reorganization of existing routine

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#18 - Mm 24/version 0.0.1

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#17 - MM-23: reorganize code for better readability

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#16 - MM-19: Enable the use of C matrix and test it

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#15 - MM-6: inversion unused

Pull Request - State: closed - Opened by jdstamp over 3 years ago

#14 - MM-18: fixed number of causal per phenotype

Pull Request - State: closed - Opened by jdstamp almost 4 years ago

#13 - MM-18: use foreach for faster simulations

Pull Request - State: closed - Opened by jdstamp almost 4 years ago

#12 - Mm 16/parametrized simulations

Pull Request - State: closed - Opened by jdstamp almost 4 years ago