Ecosyste.ms: Issues

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GitHub / lawmurray/libbi issues and pull requests

#52 - Fix typo in Dockerfile

Pull Request - State: closed - Opened by Bisaloo about 1 year ago

#52 - Fix typo in Dockerfile

Pull Request - State: closed - Opened by Bisaloo about 1 year ago

#51 - Create and publish Docker image

Pull Request - State: closed - Opened by Bisaloo over 1 year ago

#51 - Create and publish Docker image

Pull Request - State: closed - Opened by Bisaloo over 1 year ago

#50 - Burn-in settings and general model issue of LibBi

Issue - State: open - Opened by MollyCYM over 1 year ago - 1 comment

#50 - Burn-in settings and general model issue of LibBi

Issue - State: open - Opened by MollyCYM over 1 year ago - 1 comment

#49 - Installation on Linux

Issue - State: open - Opened by jandraor about 4 years ago - 3 comments

#49 - Installation on Linux

Issue - State: open - Opened by jandraor about 4 years ago - 3 comments

#48 - Install LibBi

Issue - State: open - Opened by NedaJalali-codes over 4 years ago - 1 comment

#48 - Install LibBi

Issue - State: open - Opened by NedaJalali-codes over 4 years ago - 1 comment

#47 - compilation error . missing g++ flag `-std=c++11`

Issue - State: open - Opened by pescobar about 5 years ago

#47 - compilation error . missing g++ flag `-std=c++11`

Issue - State: open - Opened by pescobar about 5 years ago

#46 - libbi with cuda

Issue - State: closed - Opened by seabbs over 5 years ago - 3 comments

#46 - libbi with cuda

Issue - State: closed - Opened by seabbs over 5 years ago - 3 comments

#45 - libbi 1.4.4 fails to run in Homebrew

Issue - State: closed - Opened by fxcoudert almost 6 years ago - 2 comments

#45 - libbi 1.4.4 fails to run in Homebrew

Issue - State: closed - Opened by fxcoudert almost 6 years ago - 2 comments

#44 - Use Sundials rather than home brewed solvers?

Issue - State: closed - Opened by idontgetoutmuch over 6 years ago - 2 comments

#44 - Use Sundials rather than home brewed solvers?

Issue - State: closed - Opened by idontgetoutmuch over 6 years ago - 2 comments

#43 - Segmentation fault when running libbi for the first time

Issue - State: closed - Opened by tcquinn almost 7 years ago - 4 comments
Labels: bug

#43 - Segmentation fault when running libbi for the first time

Issue - State: closed - Opened by tcquinn almost 7 years ago - 4 comments
Labels: bug

#42 - Remove runtime test from install time

Pull Request - State: closed - Opened by sbfnk almost 7 years ago

#42 - Remove runtime test from install time

Pull Request - State: closed - Opened by sbfnk almost 7 years ago

#41 - Fix binomial distribution on GPUs

Pull Request - State: closed - Opened by sbfnk almost 7 years ago

#41 - Fix binomial distribution on GPUs

Pull Request - State: closed - Opened by sbfnk almost 7 years ago

#40 - Add cuda-arch option (defaulting to sm_30)

Pull Request - State: closed - Opened by sbfnk almost 7 years ago

#40 - Add cuda-arch option (defaulting to sm_30)

Pull Request - State: closed - Opened by sbfnk almost 7 years ago

#39 - fix enable-cudafastmath option

Pull Request - State: closed - Opened by sbfnk almost 7 years ago

#39 - fix enable-cudafastmath option

Pull Request - State: closed - Opened by sbfnk almost 7 years ago

#38 - Remove timing option from config builder

Pull Request - State: closed - Opened by sbfnk almost 7 years ago

#38 - Remove timing option from config builder

Pull Request - State: closed - Opened by sbfnk almost 7 years ago

#37 - Multivariate PDF example

Issue - State: closed - Opened by gcgibson about 7 years ago - 1 comment

#37 - Multivariate PDF example

Issue - State: closed - Opened by gcgibson about 7 years ago - 1 comment

#36 - Libbi SIR example

Issue - State: closed - Opened by gcgibson about 7 years ago - 1 comment

#36 - Libbi SIR example

Issue - State: closed - Opened by gcgibson about 7 years ago - 1 comment

#35 - Fix corner case in binomial when x == 0 or x == n

Pull Request - State: closed - Opened by BlackEdder about 7 years ago - 1 comment

#35 - Fix corner case in binomial when x == 0 or x == n

Pull Request - State: closed - Opened by BlackEdder about 7 years ago - 1 comment

#34 - Close truncated normal bounds

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#34 - Close truncated normal bounds

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#33 - Allow sampling from Poisson with lambda=0 (return 0)

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#33 - Allow sampling from Poisson with lambda=0 (return 0)

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#32 - GPU and CPU uniform samplers to sample from the same (left-closed) interval

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#32 - GPU and CPU uniform samplers to sample from the same (left-closed) interval

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#31 - allow input for state and noise vars

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#31 - allow input for state and noise vars

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#30 - Print var id when using rewrite

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#30 - Print var id when using rewrite

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#29 - Fixed a few typos in the documentation

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#29 - Fixed a few typos in the documentation

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#28 - Improved error messages when reading netCDF input files

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#28 - Improved error messages when reading netCDF input files

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#27 - Swap orders of CUDA checks

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#27 - Swap orders of CUDA checks

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#26 - closed bounds on truncated_gaussian

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#26 - closed bounds on truncated_gaussian

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#25 - Allow negative binomial with mean zero

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#25 - Allow negative binomial with mean zero

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#24 - Fix Poisson distribution

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#24 - Fix Poisson distribution

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#23 - Don't throw error if multinomial probabilities are all zero

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#23 - Don't throw error if multinomial probabilities are all zero

Pull Request - State: closed - Opened by sbfnk over 7 years ago

#22 - Support for binomial distribution

Pull Request - State: closed - Opened by BlackEdder over 7 years ago - 2 comments

#22 - Support for binomial distribution

Pull Request - State: closed - Opened by BlackEdder over 7 years ago - 2 comments

#21 - pdf() fails when negative infinity (log(0)) is returned.

Issue - State: closed - Opened by BlackEdder over 7 years ago - 1 comment

#21 - pdf() fails when negative infinity (log(0)) is returned.

Issue - State: closed - Opened by BlackEdder over 7 years ago - 1 comment

#20 - Fixed (?:) with AVX/SSE

Pull Request - State: closed - Opened by sbfnk almost 8 years ago - 2 comments

#20 - Fixed (?:) with AVX/SSE

Pull Request - State: closed - Opened by sbfnk almost 8 years ago - 2 comments

#19 - compile fix for CUDA 8.0

Pull Request - State: closed - Opened by sbfnk almost 8 years ago - 1 comment

#19 - compile fix for CUDA 8.0

Pull Request - State: closed - Opened by sbfnk almost 8 years ago - 1 comment

#18 - fix CUDA compiler errors introduced by commit 951c1e

Pull Request - State: closed - Opened by sbfnk almost 8 years ago

#18 - fix CUDA compiler errors introduced by commit 951c1e

Pull Request - State: closed - Opened by sbfnk almost 8 years ago

#17 - Error parsing multidimensional model

Issue - State: closed - Opened by BlackEdder almost 8 years ago - 6 comments

#17 - Error parsing multidimensional model

Issue - State: closed - Opened by BlackEdder almost 8 years ago - 6 comments

#16 - Dot product within ode block fails

Issue - State: closed - Opened by BlackEdder almost 8 years ago - 3 comments

#16 - Dot product within ode block fails

Issue - State: closed - Opened by BlackEdder almost 8 years ago - 3 comments

#15 - fixed model name mismatch warning

Pull Request - State: closed - Opened by sbfnk almost 8 years ago

#15 - fixed model name mismatch warning

Pull Request - State: closed - Opened by sbfnk almost 8 years ago

#14 - Check if prior is finite when proposing in MH

Pull Request - State: closed - Opened by sbfnk almost 8 years ago

#14 - Check if prior is finite when proposing in MH

Pull Request - State: closed - Opened by sbfnk almost 8 years ago

#13 - fixes for optimise client

Pull Request - State: closed - Opened by sbfnk almost 8 years ago

#13 - fixes for optimise client

Pull Request - State: closed - Opened by sbfnk almost 8 years ago

#12 - Discrete probability distributions: Poisson and negative binomial

Pull Request - State: closed - Opened by sbfnk almost 8 years ago

#12 - Discrete probability distributions: Poisson and negative binomial

Pull Request - State: closed - Opened by sbfnk almost 8 years ago

#11 - Emacs style

Pull Request - State: closed - Opened by sbfnk almost 8 years ago

#11 - Emacs style

Pull Request - State: closed - Opened by sbfnk almost 8 years ago

#10 - Fixed links in manual

Pull Request - State: closed - Opened by sbfnk almost 8 years ago

#10 - Fixed links in manual

Pull Request - State: closed - Opened by sbfnk almost 8 years ago

#9 - Only search CUDA_ROOT subdirectories if it is set

Pull Request - State: closed - Opened by sbfnk about 8 years ago

#9 - Only search CUDA_ROOT subdirectories if it is set

Pull Request - State: closed - Opened by sbfnk about 8 years ago

#8 - Bring back CUDA check.

Pull Request - State: closed - Opened by sbfnk about 8 years ago

#7 - update build process/instructions for OSX

Pull Request - State: closed - Opened by benswift almost 9 years ago - 2 comments

#6 - Where is bi_plot_paths?

Issue - State: closed - Opened by idontgetoutmuch about 9 years ago - 1 comment

#5 - Installation Failed?

Issue - State: closed - Opened by idontgetoutmuch about 9 years ago - 16 comments

#4 - Error: don't know what to do with block 'bridge'

Issue - State: closed - Opened by agerlach over 10 years ago - 4 comments

#3 - Heaviside step function

Pull Request - State: closed - Opened by sbfnk almost 11 years ago - 1 comment

#2 - NetCDF error

Issue - State: closed - Opened by whiteBox123 about 11 years ago - 4 comments

#1 - Small fix to previous bug fix

Pull Request - State: closed - Opened by sbfnk over 11 years ago - 1 comment