Ecosyste.ms: Issues

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GitHub / lasersonlab/pepsyn issues and pull requests

#22 - Confusion about `tile` and `pad`

Issue - State: closed - Opened by PpGrApee 3 months ago - 1 comment

#21 - revtrans obfuscating tile overlap?

Issue - State: closed - Opened by dpschreiner 8 months ago - 1 comment

#20 - Selection of the codon usage table during the reverse translation step

Issue - State: closed - Opened by RChGO 10 months ago - 1 comment

#19 - Prefix suffix attached then removed?

Issue - State: closed - Opened by mattohewitt 11 months ago - 2 comments

#18 - Suffix containing stop codon and restriction site

Issue - State: closed - Opened by MHendling about 1 year ago - 5 comments

#17 - Unable to run builddbg command.

Issue - State: closed - Opened by vishnunv0911 over 1 year ago - 9 comments

#16 - ImportError: Biopython

Issue - State: closed - Opened by Tianyu-007 over 3 years ago - 5 comments

#15 - PHIP-Seq Pipeline Issue

Issue - State: closed - Opened by aaronliuUBC almost 5 years ago - 1 comment

#14 - Re-enable isort in format.sh Travis run

Issue - State: closed - Opened by laserson about 6 years ago - 1 comment

#13 - Travis fixes

Pull Request - State: closed - Opened by laserson about 6 years ago - 1 comment

#12 - Codon optimization with Arkin paper

Issue - State: closed - Opened by laserson over 6 years ago - 1 comment

#11 - Eliminate print_fasta fn from cli

Issue - State: closed - Opened by laserson over 6 years ago - 1 comment

#10 - pepsyn translate should have an option on whether to include the stop codon

Issue - State: closed - Opened by laserson over 6 years ago - 1 comment

#9 - Orf kmer cov

Issue - State: closed - Opened by laserson about 7 years ago - 1 comment

#8 - Generate oligos off a de bruijn graph

Issue - State: closed - Opened by laserson over 7 years ago - 1 comment

#7 - Test whether scikit-bio would have faster performance

Issue - State: closed - Opened by laserson over 7 years ago - 1 comment

#6 - Hand off RNG or make it seedable

Issue - State: closed - Opened by laserson over 7 years ago - 1 comment

#5 - Add better logging etc

Issue - State: closed - Opened by laserson over 7 years ago - 1 comment

#4 - Add `pepsyn stat` command

Issue - State: closed - Opened by laserson over 7 years ago - 1 comment

#3 - Setup versioneer

Issue - State: closed - Opened by laserson about 8 years ago - 1 comment

#2 - Codon table and usage is basically hardcoded to E. coli

Issue - State: closed - Opened by laserson about 8 years ago - 2 comments

#1 - Add tests for codons.py

Issue - State: closed - Opened by laserson about 8 years ago - 1 comment