Ecosyste.ms: Issues

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GitHub / lanl/BEE issues and pull requests

#685 - Slurm Submit Fail Doesn't Provide Error Output

Issue - State: open - Opened by rstyd almost 2 years ago
Labels: bug

#684 - Force requests version to < 2.29.0 to fix breaking change with urllib

Pull Request - State: closed - Opened by jtronge almost 2 years ago

#683 - Add stderr to example and some documentation

Pull Request - State: closed - Opened by pagrubel almost 2 years ago

#682 - Clarify somethings for the first time user

Issue - State: closed - Opened by pagrubel almost 2 years ago
Labels: enhancement, documentation

#680 - Checkpoint restart fix and test script

Pull Request - State: closed - Opened by jtronge almost 2 years ago - 5 comments

#679 - Allow Absolute/Relative Paths for Main CWL and YAML Files

Pull Request - State: closed - Opened by Boogie3D almost 2 years ago - 1 comment
Labels: enhancement

#678 - Builder broken with latest Charliecloud

Issue - State: closed - Opened by jtronge almost 2 years ago - 1 comment

#677 - Improve Dependency Manager Code Coverage

Issue - State: open - Opened by rstyd almost 2 years ago
Labels: core

#676 - Task Manager Resiliency: Verify that the workflow manager is back up before restarting tasks.

Issue - State: closed - Opened by aquan9 almost 2 years ago - 2 comments
Labels: High Priority

#675 - Task Manager Resiliency: Check the status of any tasks that were running via slurm. Resubmit any failed tasks.

Issue - State: closed - Opened by aquan9 almost 2 years ago - 4 comments
Labels: High Priority

#674 - Task Manager Resiliency: Rebuild the submit and job queues when the task manager comes back up.

Issue - State: closed - Opened by aquan9 almost 2 years ago - 2 comments
Labels: High Priority

#673 - Investigate Code Coverage Tools

Issue - State: open - Opened by rstyd almost 2 years ago
Labels: enhancement

#672 - Update actions/checkout from v2 to v3

Pull Request - State: closed - Opened by jtronge almost 2 years ago

#671 - Fix charliecloud --home issue

Pull Request - State: closed - Opened by rstyd almost 2 years ago - 1 comment

#670 - Add restart code to beeflow

Pull Request - State: closed - Opened by jtronge almost 2 years ago

#669 - Beeflow: restart components on failure

Issue - State: closed - Opened by jtronge almost 2 years ago - 1 comment

#668 - Add the package file we plan to upload to spack for approval

Pull Request - State: closed - Opened by aquan9 almost 2 years ago - 1 comment
Labels: enhancement, WIP

#667 - Move parser to client

Issue - State: closed - Opened by pagrubel almost 2 years ago

#666 - Issues 568 621/documentation

Pull Request - State: closed - Opened by pagrubel almost 2 years ago - 1 comment

#665 - Add Resilience to the Scheduler

Issue - State: closed - Opened by pagrubel almost 2 years ago - 2 comments

#664 - Improve usability of 'beecfg new'

Pull Request - State: closed - Opened by jtronge almost 2 years ago

#663 - Use container example

Pull Request - State: closed - Opened by pagrubel almost 2 years ago - 1 comment
Labels: WIP

#662 - Remove extra log output

Pull Request - State: closed - Opened by jtronge almost 2 years ago

#661 - beeclient submit: interpret MAIN_CWL and YAML arguments as paths relative to ${PWD}

Issue - State: closed - Opened by gaber almost 2 years ago - 13 comments
Labels: enhancement

#660 - Slurm command line worker

Pull Request - State: closed - Opened by jtronge almost 2 years ago - 7 comments

#659 - BEE viz for all workflows (running or completed)

Issue - State: closed - Opened by pagrubel almost 2 years ago - 2 comments

#658 - Using "bee_client listall" before any workflows have been run

Issue - State: closed - Opened by pagrubel almost 2 years ago - 2 comments
Labels: good first issue

#657 - Fix submit jinja filename

Pull Request - State: closed - Opened by rstyd almost 2 years ago

#656 - beecfg doesn't use updated slurm-submit jinja file

Issue - State: closed - Opened by rstyd almost 2 years ago
Labels: bug

#655 - Combine gdbs

Pull Request - State: closed - Opened by rstyd almost 2 years ago - 1 comment

#654 - Workflow stays in 'Running' state when task submission fails

Issue - State: open - Opened by jtronge almost 2 years ago - 1 comment
Labels: discuss

#653 - Merge submit and start commands

Pull Request - State: closed - Opened by jtronge almost 2 years ago - 3 comments

#652 - Add beeflow:useContainer example

Pull Request - State: closed - Opened by pagrubel about 2 years ago
Labels: WIP

#651 - Modify code in the worker and job templates to ensure that MPI works

Pull Request - State: closed - Opened by jtronge about 2 years ago - 1 comment

#650 - Tutorial/Hackathon instance readiness

Issue - State: closed - Opened by pagrubel about 2 years ago - 1 comment

#649 - Spackify BEE

Issue - State: open - Opened by aquan9 about 2 years ago

#648 - Fixes for Newer Slurm Versions

Pull Request - State: closed - Opened by jtronge about 2 years ago

#647 - Sphinx Dependency Problem

Issue - State: closed - Opened by jtronge about 2 years ago - 2 comments

#646 - Fix PyLama and poetry install errors

Pull Request - State: closed - Opened by jtronge about 2 years ago - 1 comment

#645 - Ml workflow

Pull Request - State: closed - Opened by pagrubel about 2 years ago - 1 comment

#644 - Ml workflow

Pull Request - State: closed - Opened by pagrubel about 2 years ago
Labels: WIP

#643 - Single file CWL broken input

Issue - State: closed - Opened by jtronge about 2 years ago

#642 - GUI Client

Pull Request - State: closed - Opened by jtronge about 2 years ago - 3 comments

#635 - Look into alternative to slurmrestd so that it won't be a requirment on systems

Issue - State: closed - Opened by pagrubel about 2 years ago - 2 comments
Labels: task manager

#631 - Checkpoint/Restart is broken

Issue - State: closed - Opened by pagrubel about 2 years ago - 2 comments
Labels: bug, High Priority

#629 - Location for sockets is hardcoded in cli.py

Issue - State: closed - Opened by pagrubel about 2 years ago - 1 comment
Labels: bug

#628 - Add a way to specify the dependency container from the command line

Issue - State: closed - Opened by pagrubel about 2 years ago - 1 comment
Labels: enhancement, good first issue

#626 - Support for LSF is broken

Issue - State: open - Opened by pagrubel about 2 years ago - 1 comment
Labels: bug

#624 - Enable Modifying BEE Config and Workdir Location

Issue - State: closed - Opened by rstyd about 2 years ago - 3 comments
Labels: core

#622 - Merge submit and start client commands into one

Issue - State: closed - Opened by jtronge about 2 years ago - 4 comments
Labels: core, High Priority

#621 - Conda environment - Documentation

Issue - State: closed - Opened by pagrubel about 2 years ago - 4 comments
Labels: documentation

#618 - BEE error message change

Issue - State: closed - Opened by pagrubel about 2 years ago - 3 comments

#615 - Combine Sqlite DB Libraries

Issue - State: closed - Opened by rstyd about 2 years ago
Labels: enhancement

#614 - Resilience: Add to the Task Manager

Issue - State: closed - Opened by rstyd about 2 years ago - 2 comments
Labels: core, High Priority

#613 - Resilience: Add to the Workflow Manager

Issue - State: open - Opened by rstyd about 2 years ago - 1 comment
Labels: core, High Priority

#609 - Version 0.1.1

Pull Request - State: closed - Opened by jtronge about 2 years ago
Labels: lint-only

#608 - Fix settings on main for documentation

Issue - State: closed - Opened by jtronge about 2 years ago - 2 comments

#605 - Add stderr to output in slurm worker

Pull Request - State: closed - Opened by rstyd about 2 years ago - 6 comments

#604 - Add Autocompletion for workflow id's to beeclient and beeflow

Issue - State: open - Opened by rstyd about 2 years ago - 1 comment
Labels: enhancement

#602 - Change docs URL and prepare for 0.1.0 release

Pull Request - State: closed - Opened by jtronge about 2 years ago

#598 - Add get_workdir to the WorkflowInterface

Issue - State: open - Opened by jtronge about 2 years ago - 1 comment

#597 - Fix failing unit tests and update scheduler tests

Pull Request - State: closed - Opened by jtronge about 2 years ago

#594 - Improve MPI options flexibility

Issue - State: closed - Opened by pagrubel over 2 years ago - 2 comments

#592 - MPI options do they work?

Issue - State: closed - Opened by pagrubel over 2 years ago - 2 comments

#590 - Make sure things work on Crusher

Issue - State: closed - Opened by pagrubel over 2 years ago - 1 comment

#589 - Remove MARS and use Python 3.10 in CI

Pull Request - State: closed - Opened by jtronge over 2 years ago - 2 comments

#584 - Add Jake's code 500 handler to Workflow Manager, Task Manager, and Scheduler

Issue - State: open - Opened by rstyd over 2 years ago
Labels: enhancement, Med Priority

#582 - Add Resilience to BEE

Issue - State: open - Opened by rstyd over 2 years ago - 1 comment
Labels: core, High Priority

#581 - Add beeflow clean command

Issue - State: closed - Opened by rstyd over 2 years ago - 3 comments
Labels: enhancement

#580 - Need to load the charliecloud module before beeflow start

Issue - State: closed - Opened by rstyd over 2 years ago - 6 comments
Labels: bug

#579 - beeflow start should print an error message if components are running

Issue - State: closed - Opened by rstyd over 2 years ago - 1 comment
Labels: bug

#578 - Add integration test for multiple workflows

Pull Request - State: closed - Opened by jtronge over 2 years ago

#575 - Rename bee_client to beeclient and formatting

Pull Request - State: closed - Opened by aquan9 over 2 years ago

#568 - Add Contributors and/or BEE team to Documentation

Issue - State: closed - Opened by pagrubel over 2 years ago - 1 comment
Labels: documentation

#563 - Error handling

Pull Request - State: closed - Opened by jtronge over 2 years ago - 1 comment

#562 - Checkpoint restart fix

Pull Request - State: closed - Opened by jtronge over 2 years ago - 2 comments

#560 - Fix for issue #551 - Require dockerfile in tarball

Pull Request - State: closed - Opened by jtronge over 2 years ago - 1 comment

#559 - Broken Slurm Unit Test

Issue - State: closed - Opened by jtronge over 2 years ago - 2 comments

#556 - Steven/blast example

Pull Request - State: closed - Opened by pagrubel over 2 years ago

#555 - Fix unit tests failures

Pull Request - State: closed - Opened by jtronge over 2 years ago - 2 comments

#553 - Check if beeflow is running in cli.py

Issue - State: closed - Opened by jtronge over 2 years ago - 2 comments
Labels: bug

#552 - Generate WF ID pre-parsing and support CWL stderr

Pull Request - State: closed - Opened by Boogie3D over 2 years ago - 1 comment
Labels: enhancement, core, WIP

#550 - Builder Errors

Issue - State: closed - Opened by jtronge over 2 years ago - 1 comment

#547 - Workflow database file should be in bee_workdir

Issue - State: closed - Opened by pagrubel over 2 years ago - 2 comments
Labels: core

#538 - Unit test background dependencies

Issue - State: open - Opened by jtronge over 2 years ago - 1 comment

#533 - Update and test cloud code with public repo

Issue - State: open - Opened by jtronge over 2 years ago - 1 comment

#532 - WFM Refactor

Pull Request - State: closed - Opened by rstyd over 2 years ago - 3 comments

#523 - Container for clamr-ffmpeg needs to be streamlined

Issue - State: open - Opened by pagrubel over 2 years ago
Labels: Low Priority

#517 - Add requirement/task helper method

Issue - State: closed - Opened by jtronge over 2 years ago - 1 comment
Labels: enhancement

#510 - Add warning to documentation about changing values in bee.conf

Issue - State: closed - Opened by pagrubel over 2 years ago - 1 comment
Labels: enhancement, documentation

#502 - Issue433/cleanup modules

Pull Request - State: closed - Opened by pagrubel over 2 years ago

#500 - Document that BEE extensions are not allowed in Requirements in CWL

Issue - State: closed - Opened by pagrubel over 2 years ago - 1 comment
Labels: documentation

#498 - On Query if a build is happening it would be nice to know

Issue - State: open - Opened by pagrubel over 2 years ago
Labels: enhancement, builder

#495 - Change containerName to beeflow:containerName

Pull Request - State: closed - Opened by jtronge over 2 years ago - 1 comment
Labels: WIP

#493 - No YAML Workflows

Issue - State: open - Opened by jtronge over 2 years ago - 1 comment
Labels: bug, question, Low Priority

#485 - Builder needs to check dockerRequirements

Issue - State: open - Opened by pagrubel over 2 years ago - 2 comments
Labels: bug, builder, High Priority

#483 - Container Hashing/Versioning

Issue - State: open - Opened by jtronge over 2 years ago
Labels: enhancement