Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / lanl/BEE issues and pull requests

#887 - Update documentation for the integration tests

Pull Request - State: closed - Opened by jtronge 7 months ago

#886 - Check if neo4j and redis image are in their default location on the machine

Issue - State: closed - Opened by rstyd 7 months ago - 4 comments
Labels: enhancement, good first issue, Med Priority

#885 - added check for /tmp or /var/tmp

Pull Request - State: closed - Opened by Leahh02 7 months ago

#884 - Remove Ports from GraphDB Config Section

Issue - State: closed - Opened by rstyd 7 months ago - 1 comment
Labels: enhancement

#883 - Add Check for Different Front End

Issue - State: closed - Opened by rstyd 7 months ago - 2 comments
Labels: bug, High Priority

#882 - Only Run One Neo4j Instance for a BEE Instance

Pull Request - State: closed - Opened by kabir-vats 7 months ago - 1 comment
Labels: enhancement, core, dependencies

#881 - Automatic beeflow-remote-api port resolution

Issue - State: open - Opened by aquan9 7 months ago

#879 - Issue871/delete_use_archive_config

Pull Request - State: closed - Opened by Leahh02 7 months ago - 1 comment

#878 - Bump certifi from 2024.6.2 to 2024.7.4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, python

#877 - Add configuration option to specify the archive directory

Issue - State: closed - Opened by rstyd 7 months ago

#876 - Handle the WorkerError exception and remove job for processing queue

Issue - State: closed - Opened by pagrubel 7 months ago - 1 comment
Labels: bug, High Priority

#874 - Checking job state after it already has a COMPLETED (or other state that says its done) sometimes giving "NOT_RESPONDING"

Issue - State: closed - Opened by pagrubel 7 months ago - 3 comments
Labels: good first issue, task manager

#873 - Add More Tests to improve Code Coverage

Issue - State: open - Opened by rstyd 7 months ago - 2 comments

#872 - Issue735/clear workflow

Pull Request - State: closed - Opened by kabir-vats 8 months ago

#871 - use_archive in the configuration file bee.conf is currently unused

Issue - State: closed - Opened by pagrubel 8 months ago - 1 comment
Labels: good first issue

#870 - Forbid Workflow Workdir from being on /tmp or /var/tmp

Issue - State: closed - Opened by rstyd 8 months ago - 3 comments
Labels: enhancement, good first issue

#869 - updated work_dir path

Pull Request - State: closed - Opened by Leahh02 8 months ago - 2 comments
Labels: documentation

#868 - Update Example Workflows: Clarify the $WORKDIR_PATH

Issue - State: closed - Opened by Leahh02 8 months ago - 6 comments
Labels: good first issue, documentation

#867 - Update Developer's Guide: Explain our Git Workflow

Issue - State: closed - Opened by pagrubel 8 months ago - 1 comment
Labels: good first issue, documentation

#866 - enable shell option on flux worker

Pull Request - State: closed - Opened by kchilleri 8 months ago - 2 comments

#865 - Remove enhanced client from github

Pull Request - State: closed - Opened by rstyd 8 months ago

#864 - Bump requests from 2.28.2 to 2.32.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 2 comments
Labels: dependencies, python

#863 - Bump urllib3 from 1.26.18 to 1.26.19

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, python

#862 - Bump gunicorn from 20.1.0 to 22.0.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, python

#861 - Bump braces from 3.0.2 to 3.0.3 in /beeflow/enhanced_client

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 2 comments
Labels: dependencies, javascript

#859 - Update test directions in developer manual

Issue - State: closed - Opened by pagrubel 8 months ago - 1 comment
Labels: good first issue

#858 - Add MPI integration test code

Pull Request - State: closed - Opened by jtronge 8 months ago - 5 comments

#857 - Add integration test for MPI jobs

Issue - State: closed - Opened by jtronge 8 months ago - 1 comment
Labels: High Priority

#856 - Add Script Option to Pre/Post Script & Change MPI Call

Pull Request - State: closed - Opened by rstyd 8 months ago

#855 - Refactor BEE client code

Issue - State: open - Opened by jtronge 8 months ago
Labels: High Priority

#854 - Enable beeflow submit from working directory

Pull Request - State: closed - Opened by jtronge 8 months ago

#853 - Enable Running Beeflow Submit from within a Workflow Directory

Issue - State: closed - Opened by rstyd 8 months ago - 1 comment
Labels: enhancement

#852 - Security concrete

Pull Request - State: closed - Opened by aquan9 8 months ago

#851 - Fix edge case in badge generation.

Pull Request - State: closed - Opened by aquan9 8 months ago - 1 comment

#848 - Add More Validation to the Parser/Add Parse Only Option

Issue - State: open - Opened by rstyd 8 months ago
Labels: enhancement

#847 - Pre/Post Scripts should use the same $SHELL as defined in the BEE config

Issue - State: closed - Opened by rstyd 9 months ago - 1 comment
Labels: enhancement

#846 - Slurm Worker Should Respect beeflow:ScriptRequirement $SHELL Option

Issue - State: closed - Opened by rstyd 9 months ago - 2 comments
Labels: enhancement

#845 - Add $SHELL Option to BEE ScriptRequirement

Issue - State: closed - Opened by rstyd 9 months ago - 4 comments
Labels: enhancement

#844 - validate shell environment in pre/post script files

Pull Request - State: closed - Opened by kchilleri 9 months ago

#843 - Pytest coverage

Pull Request - State: closed - Opened by aquan9 9 months ago - 1 comment

#842 - Check for missing workflow inputs

Pull Request - State: closed - Opened by jtronge 9 months ago

#841 - Generate CWL

Pull Request - State: closed - Opened by rstyd 9 months ago - 4 comments

#840 - Processing queues even when there are no workflows

Issue - State: closed - Opened by pagrubel 9 months ago - 2 comments

#839 - Test slurm commands worker in CI

Pull Request - State: closed - Opened by jtronge 9 months ago - 2 comments

#837 - Beeflow connect - A REST API for BEEflow itself.

Pull Request - State: closed - Opened by aquan9 9 months ago - 10 comments

#835 - Should we disable bee enhanced client

Issue - State: closed - Opened by pagrubel 10 months ago - 2 comments

#834 - Fix dependabot security issue with gunicorn

Issue - State: closed - Opened by pagrubel 10 months ago - 2 comments

#833 - Paused workflow may not be able to continue overnight

Issue - State: closed - Opened by pagrubel 10 months ago - 1 comment

#832 - Oops I can't seem to typ

Pull Request - State: closed - Opened by pagrubel 10 months ago - 1 comment

#831 - Pause running workflows when stopping beeflow with 'beeflow core stop'

Pull Request - State: closed - Opened by pagrubel 10 months ago - 1 comment

#830 - Pause running workflows when stopping beeflow with 'beeflow core stop'

Pull Request - State: closed - Opened by pagrubel 10 months ago - 7 comments

#829 - Dependency containers on Arm

Issue - State: closed - Opened by pagrubel 10 months ago - 2 comments
Labels: good first issue

#828 - Allow removal of a workflow with any Archive status

Pull Request - State: closed - Opened by pagrubel 10 months ago - 5 comments

#827 - Update TM for task update resiliency

Pull Request - State: closed - Opened by jtronge 10 months ago

#826 - Fix status display

Pull Request - State: closed - Opened by pagrubel 10 months ago

#825 - Correct WIP and no ci label usage

Pull Request - State: closed - Opened by pagrubel 10 months ago - 3 comments

#824 - Archive failed checkpoint restart workflows

Pull Request - State: closed - Opened by jtronge 10 months ago

#823 - Add test (ci) when slurmrestd is not available

Issue - State: closed - Opened by pagrubel 10 months ago - 3 comments
Labels: good first issue

#822 - Flux Run Environment

Issue - State: open - Opened by rstyd 10 months ago
Labels: enhancement

#821 - Fix WIP and no-ci labels

Issue - State: closed - Opened by pagrubel 10 months ago - 1 comment
Labels: WIP (no-ci)

#820 - Specify docutils version to fix poetry/docutils bug

Pull Request - State: closed - Opened by jtronge 10 months ago - 1 comment

#819 - Update Neo4j to 5.x

Pull Request - State: closed - Opened by jtronge 10 months ago - 2 comments

#818 - add pre/post script support to flux worker

Pull Request - State: closed - Opened by kchilleri 10 months ago - 1 comment

#817 - Upgrade Neo4j version

Issue - State: closed - Opened by jtronge 10 months ago - 1 comment

#816 - Start 0.1.9dev

Pull Request - State: closed - Opened by pagrubel 11 months ago

#815 - Release 0.1.8

Pull Request - State: closed - Opened by pagrubel 11 months ago - 1 comment

#814 - Release 0.1.8

Pull Request - State: closed - Opened by pagrubel 11 months ago - 1 comment

#813 - Release 0.1.8

Pull Request - State: closed - Opened by pagrubel 11 months ago - 1 comment

#812 - Update actions, sphinx version and build docs for every PR

Pull Request - State: closed - Opened by jtronge 11 months ago

#811 - Fix beeflow config new error

Pull Request - State: closed - Opened by jtronge 11 months ago

#810 - Bump ip from 2.0.0 to 2.0.1 in /beeflow/enhanced_client

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, javascript

#809 - Bump follow-redirects from 1.15.5 to 1.15.6 in /beeflow/enhanced_client

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, javascript

#808 - Fix issues building the documentation

Pull Request - State: closed - Opened by aquan9 11 months ago - 1 comment

#807 - Release 0.1.7

Pull Request - State: closed - Opened by pagrubel 11 months ago

#806 - Ensure failed tasks cause dependent tasks to fail

Pull Request - State: closed - Opened by jtronge 11 months ago - 5 comments

#805 - Fix minor error when attempting reset with no active workflows

Pull Request - State: closed - Opened by pagrubel 11 months ago

#804 - Viewing errors, outputs and scripts for tasks

Issue - State: open - Opened by pagrubel 11 months ago
Labels: enhancement

#803 - Fix CRT workdir bind mount

Pull Request - State: closed - Opened by rstyd 11 months ago - 2 comments
Labels: WIP

#802 - Redis locale fix

Pull Request - State: closed - Opened by rstyd 11 months ago

#801 - Add $SHELL option to pre/post script

Issue - State: closed - Opened by rstyd 11 months ago
Labels: enhancement

#800 - Revert "add log.error() calls to wfi and neo4j_driver files"

Pull Request - State: closed - Opened by pagrubel 11 months ago

#798 - Update config code to handle invalid/missing options

Pull Request - State: closed - Opened by jtronge 11 months ago - 3 comments

#797 - Complete Release Process for 0.1.8

Issue - State: closed - Opened by pagrubel 11 months ago - 1 comment

#796 - Add pre/post script to flux worker

Issue - State: closed - Opened by pagrubel 11 months ago
Labels: enhancement

#795 - Updating config file automatically

Issue - State: closed - Opened by pagrubel 11 months ago - 1 comment
Labels: enhancement

#794 - Fix reset error issue #757: caused errors when there were active wor…

Pull Request - State: closed - Opened by pagrubel 11 months ago - 1 comment

#793 - Fix reset error: addresses issue #757

Pull Request - State: closed - Opened by pagrubel 11 months ago - 6 comments

#792 - add log.error() calls to wfi and neo4j_driver files

Pull Request - State: closed - Opened by kchilleri 11 months ago - 2 comments

#791 - Fix locale issue for redis on certain systems

Pull Request - State: closed - Opened by rstyd 11 months ago
Labels: core

#790 - Invalid workflow step inputs are not caught until runtime

Issue - State: closed - Opened by jtronge 12 months ago - 2 comments
Labels: bug

#789 - Initial task manager resiliency and error handling

Pull Request - State: closed - Opened by jtronge 12 months ago

#788 - Add pre/post script support

Pull Request - State: closed - Opened by rstyd 12 months ago - 5 comments

#787 - Update Charliecloud version to 0.36

Pull Request - State: closed - Opened by jtronge 12 months ago