lanl/4DGB issues and pull requests

#97 - Geometry

Pull Request - State: closed - Opened by dhrogers over 2 years ago

#96 - Project

Pull Request - State: closed - Opened by dhrogers over 2 years ago

#95 - Adding makefile testing targets

Pull Request - State: closed - Opened by dhrogers over 2 years ago

#94 - Remove gid

Pull Request - State: closed - Opened by dhrogers over 2 years ago

#93 - Add submodule to process two types of annotation files (gff, gtf)

Issue - State: open - Opened by dhrogers over 2 years ago
Labels: bug

#92 - Add image capture to geometry view

Issue - State: open - Opened by dhrogers over 2 years ago
Labels: enhancement

#91 - updating layout of contact map

Pull Request - State: closed - Opened by dhrogers almost 3 years ago

#90 - Implement production version of server container and add new run_project script

Pull Request - State: closed - Opened by camtauxe about 3 years ago

#89 - Gwork: adding new workflow tool

Pull Request - State: closed - Opened by dhrogers about 3 years ago

#88 - Finish setting center-of-rotation feature. Implement a Docker Container to build/server project

Pull Request - State: closed - Opened by camtauxe about 3 years ago

#87 - Geometry view selection bug

Issue - State: open - Opened by dhrogers about 3 years ago
Labels: bug

#86 - Geom redesign

Pull Request - State: closed - Opened by dhrogers about 3 years ago

#85 - Automatically save & restore state. Major overhaul to how state is retained and communicated (rebased)

Pull Request - State: closed - Opened by camtauxe about 3 years ago

#84 - Add 'data upload' workflow steps

Issue - State: open - Opened by dhrogers about 3 years ago - 2 comments
Labels: enhancement

#83 - Add UI label options

Issue - State: open - Opened by dhrogers about 3 years ago
Labels: enhancement

#82 - Add UI controls to change center of rotation

Issue - State: open - Opened by dhrogers about 3 years ago
Labels: enhancement

#81 - Automatically save & restore state. Major overhaul to how state is retained and communicated

Pull Request - State: closed - Opened by camtauxe over 3 years ago - 1 comment

#80 - Allow saving & restoring of Selection through URL parameters.

Pull Request - State: closed - Opened by camtauxe over 3 years ago

#79 - Implement multiple selections in Contact Map Widget

Pull Request - State: closed - Opened by camtauxe over 3 years ago

#78 - DB and schema updates

Pull Request - State: closed - Opened by dhrogers over 3 years ago

#77 - DB cleanup

Pull Request - State: closed - Opened by dhrogers over 3 years ago

#76 - Fix selections test

Pull Request - State: closed - Opened by camtauxe over 3 years ago

#75 - Refactor Selection Management

Pull Request - State: closed - Opened by camtauxe over 3 years ago - 1 comment

#74 - ContactMap: determine what value is to be shown in scalar bar

Issue - State: open - Opened by dhrogers over 3 years ago
Labels: bug

#73 - Scalarbar (issue #27)

Pull Request - State: closed - Opened by dhrogers over 3 years ago

#72 - Testing: create docker container for interactive testing of specific browser versions

Issue - State: open - Opened by dhrogers over 3 years ago - 1 comment

#71 - GeometryCanvas: create better axes helper

Issue - State: closed - Opened by dhrogers over 3 years ago - 1 comment
Labels: enhancement

#70 - Clean tests

Pull Request - State: closed - Opened by dhrogers over 3 years ago

#69 - Verify that bin/make_release test.00 creates a working version of the browser

Issue - State: closed - Opened by dhrogers over 3 years ago - 1 comment

#68 - Release v0.9

Pull Request - State: closed - Opened by dhrogers over 3 years ago

#67 - More Contact Map Selection Improvements

Pull Request - State: closed - Opened by camtauxe over 3 years ago

#66 - Contact Map: add border around contact map

Issue - State: closed - Opened by dhrogers over 3 years ago
Labels: enhancement

#65 - un-private private class fields

Pull Request - State: closed - Opened by camtauxe over 3 years ago - 1 comment

#64 - Contact map: when selection is released, update the 'Location' field, and set application selection

Issue - State: closed - Opened by dhrogers over 3 years ago
Labels: enhancement

#63 - Redesign selection and other common application state, and how this is communicated among components.

Issue - State: closed - Opened by dhrogers over 3 years ago - 1 comment
Labels: enhancement

#62 - Contact Map widgets sync with ControlPanel and each-other

Pull Request - State: closed - Opened by camtauxe over 3 years ago - 1 comment

#61 - Version 05 19

Pull Request - State: closed - Opened by dhrogers over 3 years ago

#60 - Version 05 19

Pull Request - State: closed - Opened by dhrogers over 3 years ago

#59 - ContactMap now uses the GTK Client class instead of doing its own fetch

Pull Request - State: closed - Opened by camtauxe over 3 years ago

#58 - Fix incorrect ContactMap resizing

Pull Request - State: closed - Opened by camtauxe over 3 years ago

#57 - Update clients for production server, and fix tests

Pull Request - State: closed - Opened by camtauxe over 3 years ago

#56 - Firefox: error loading site

Issue - State: open - Opened by dhrogers over 3 years ago - 2 comments
Labels: bug

#55 - Order of track pairs is not stable

Issue - State: closed - Opened by dhrogers over 3 years ago - 1 comment
Labels: bug

#54 - General Undo/Redo capability

Issue - State: open - Opened by dhrogers over 3 years ago

#53 - TrackPanel: add 'clear all' button

Issue - State: closed - Opened by dhrogers over 3 years ago - 1 comment

#52 - Client test failing

Issue - State: closed - Opened by dhrogers over 3 years ago - 1 comment
Labels: bug

#51 - adding curve segment class design

Pull Request - State: closed - Opened by dhrogers over 3 years ago

#50 - Implement a production-ready variant of the server

Pull Request - State: closed - Opened by camtauxe over 3 years ago

#49 - Add curved geometry option for structure file representation

Issue - State: closed - Opened by dhrogers over 3 years ago - 1 comment
Labels: enhancement

#48 - Track Panel: right mouse click for menu: remove

Issue - State: open - Opened by dhrogers over 3 years ago
Labels: enhancement

#47 - Selection

Pull Request - State: closed - Opened by dhrogers over 3 years ago

#46 - ControlPanel: add hover action to show all contents of selection entry widgets

Issue - State: open - Opened by dhrogers over 3 years ago
Labels: enhancement

#45 - Manage selection so location, genes and segments are all synchronized

Issue - State: closed - Opened by dhrogers over 3 years ago - 1 comment
Labels: enhancement

#44 - Ability to upload a structure file

Issue - State: open - Opened by dhrogers over 3 years ago
Labels: enhancement

#43 - Add ability to upload a contact map

Issue - State: open - Opened by dhrogers over 3 years ago
Labels: enhancement

#42 - Contact map: multiple region select

Issue - State: closed - Opened by dhrogers over 3 years ago - 1 comment
Labels: enhancement

#41 - Remove Publisher class, and use Node.js EventEmitter

Issue - State: closed - Opened by dhrogers over 3 years ago - 1 comment

#40 - Provide capability to link/unlink multiple contact map widgets.

Issue - State: open - Opened by dhrogers over 3 years ago - 1 comment
Labels: enhancement

#39 - Add examples

Pull Request - State: closed - Opened by dhrogers over 3 years ago

#38 - Examples

Pull Request - State: closed - Opened by ricardosida over 3 years ago

#37 - Contact map x/y axis labels should reflect the positions of the sequence, not the number of the segment.

Issue - State: open - Opened by dhrogers over 3 years ago

#36 - Add colormap to ContactMap widget

Issue - State: closed - Opened by dhrogers over 3 years ago - 2 comments

#35 - Include authentication management in python and javascript Client classes

Issue - State: closed - Opened by dhrogers over 3 years ago - 1 comment

#34 - Update master

Pull Request - State: closed - Opened by camtauxe over 3 years ago

#33 - Re-arrange codebase and refactor Javascript library

Pull Request - State: closed - Opened by camtauxe over 3 years ago

#32 - remove TheClient global from classes

Issue - State: open - Opened by dhrogers over 3 years ago

#31 - Determine if we should upgrade to latest version of three.js

Issue - State: open - Opened by dhrogers over 3 years ago

#30 - Demonstrate release process for running secure server in the cloud

Issue - State: closed - Opened by dhrogers over 3 years ago

#29 - Variable redesign

Pull Request - State: closed - Opened by dhrogers over 3 years ago

#28 - Update set_array API to support multiple slice arrays

Issue - State: open - Opened by dhrogers over 3 years ago

#27 - Add colorbar scale to GTKGeometryCanvas

Issue - State: closed - Opened by dhrogers over 3 years ago - 3 comments
Labels: enhancement

#26 - Add global view to GTKGeometryCanvas

Issue - State: open - Opened by dhrogers over 3 years ago
Labels: enhancement

#25 - Make contactmap widget repositionable

Issue - State: closed - Opened by dhrogers over 3 years ago - 1 comment

#24 - create examples directory and first example

Issue - State: closed - Opened by dhrogers over 3 years ago - 3 comments

#23 - add get_segment_ids( structure )

Issue - State: closed - Opened by dhrogers over 3 years ago - 1 comment

#22 - Compare

Pull Request - State: closed - Opened by dhrogers over 3 years ago

#21 - Client integration

Pull Request - State: closed - Opened by dhrogers over 3 years ago

#20 - Js client test

Pull Request - State: closed - Opened by ricardosida over 3 years ago

#19 - add test for get_contactmap to testing/test_gentk.py (on js-client-test branch)

Issue - State: closed - Opened by dhrogers over 3 years ago - 5 comments

#18 - Update all gtk classes to use GTKClient

Issue - State: closed - Opened by dhrogers over 3 years ago - 1 comment
Labels: enhancement

#17 - Adding JS Client test

Pull Request - State: closed - Opened by dhrogers over 3 years ago

#16 - Test gentk

Pull Request - State: closed - Opened by ricardosida over 3 years ago

#15 - Test gentk

Pull Request - State: closed - Opened by ricardosida over 3 years ago

#14 - Proposal: Re-organizing directory layout

Issue - State: closed - Opened by camtauxe over 3 years ago - 8 comments
Labels: enhancement

#13 - Test gentk

Pull Request - State: closed - Opened by ricardosida over 3 years ago

#12 - Check behavior of test.00 viewer, given new interval value for test.00/project.json

Issue - State: closed - Opened by dhrogers over 3 years ago - 1 comment

#11 - add client tests for 'get genes for segment' and 'get segments for gene'

Issue - State: closed - Opened by dhrogers over 3 years ago - 5 comments

#10 - Contact Map can zoom/pan and also has settings in project.json

Pull Request - State: closed - Opened by camtauxe over 3 years ago

#9 - handle (and preserve) NaN values in contact maps

Pull Request - State: closed - Opened by camtauxe over 3 years ago

#8 - Implement interactive selection on contact map

Pull Request - State: closed - Opened by camtauxe over 3 years ago

#7 - Determine if there is a workflow for github actions for javascript testing that does not use node.js infrastructure

Issue - State: closed - Opened by dhrogers over 3 years ago - 5 comments

#6 - Python reports syntax error in make_release script

Issue - State: closed - Opened by dhrogers over 3 years ago - 3 comments

#5 - Viewable Contact Map Widget

Pull Request - State: closed - Opened by camtauxe over 3 years ago

#4 - Data backend for Contact Maps

Pull Request - State: closed - Opened by camtauxe over 3 years ago - 2 comments

GitHub / lanl/4DGB issues and pull requests