Ecosyste.ms: Issues

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GitHub / langfob/bdpg issues and pull requests

#62 - Should make object generation return values more consistent

Issue - State: open - Opened by langfob over 3 years ago
Labels: enhancement, coding task

#61 - Need to set k__arity exponent default to 2 instead of 1

Issue - State: closed - Opened by langfob almost 4 years ago - 1 comment
Labels: coding task, possible bug

#60 - Adding missing assignment to Xu_bdprob_cor@dependent_node_IDs in gen_single_bdprob.R

Issue - State: open - Opened by langfob almost 6 years ago - 1 comment
Labels: wontfix, possible bug, design note

#59 - Should starting_dir be passed in to the repro...() functions?

Issue - State: open - Opened by langfob almost 6 years ago
Labels: possible bug

#58 - Allowing duplicate links is failing when the flag is set to allow them

Issue - State: open - Opened by langfob about 6 years ago
Labels: bug, coding task

#57 - Need better error handling in vn(), vb(), etc

Issue - State: open - Opened by langfob about 6 years ago
Labels: enhancement, coding task

#56 - max_allowed_num_spp is not checked when building wrapped problems

Issue - State: open - Opened by langfob almost 7 years ago
Labels: enhancement, possible bug

#55 - What if yaml file specifies FP and FN counts should be matched but one of them is 0?

Issue - State: open - Opened by langfob almost 7 years ago
Labels: possible bug

#54 - Need to fix the way that seeds are written to results file

Issue - State: open - Opened by langfob almost 7 years ago
Labels: bug, coding task

#53 - Tzar emulator console output file not saved when a run crashes

Issue - State: closed - Opened by langfob almost 7 years ago - 1 comment
Labels: question, coding task

#52 - Need better way to guarantee quick test runs

Issue - State: open - Opened by langfob about 7 years ago
Labels: enhancement, coding task

#51 - Cmd line tzar says it succeeded even though R crashed

Issue - State: open - Opened by langfob over 7 years ago
Labels: possible bug

#50 - Should App track realized error rate, not generator error probability?

Issue - State: closed - Opened by langfob over 7 years ago - 1 comment
Labels: question, coding task, design note

#49 - Marxan input files (pu.dat, etc.) are being written to project main dir

Issue - State: open - Opened by langfob over 7 years ago - 4 comments
Labels: possible bug

#48 - Set up for doing experiments in waves from storage instead of all actions at one time?

Issue - State: closed - Opened by langfob over 7 years ago - 1 comment
Labels: enhancement, coding task, design note

#47 - Need to replace some occurrences of parameters$... with values in arg list

Issue - State: open - Opened by langfob over 7 years ago
Labels: coding task, design note

#46 - Be careful when combining RSrun results since # and names of columns may differ

Issue - State: open - Opened by langfob over 7 years ago
Labels: documentation note

#45 - Is global variable object GC never used? Should it be?

Issue - State: closed - Opened by langfob over 7 years ago - 1 comment
Labels: possible bug

#44 - Is the check for marxan best looking at the correct issue?

Issue - State: open - Opened by langfob over 7 years ago
Labels: question, possible bug

#43 - Are top level boolean controls for things like network metrics checked?

Issue - State: closed - Opened by langfob over 7 years ago - 1 comment
Labels: possible bug

#42 - num_independent_nodes_per_group occurs in 2 classes

Issue - State: open - Opened by langfob over 7 years ago
Labels: possible bug

#41 - OK_marxan_solution_IS_apparent_best file should be written to RSrun, not tzar dir

Issue - State: closed - Opened by langfob over 7 years ago - 1 comment
Labels: bug

#40 - Check if marxan solution is correct size & really is a solution

Issue - State: open - Opened by langfob over 7 years ago
Labels: possible bug

#39 - Make sure everything in wrapped (and APP) problems has the right dimensions

Issue - State: open - Opened by langfob over 7 years ago
Labels: possible bug

#38 - How to make function to document variables in a function instead of hard-coding?

Issue - State: closed - Opened by langfob over 7 years ago - 1 comment
Labels: question

#37 - Problems with trying to initialize a class from a different package

Issue - State: open - Opened by langfob over 7 years ago
Labels: question, documentation note, possible bug, design note

#36 - Change gscp_15 to cbind dfs loaded from files instead of current method?

Issue - State: closed - Opened by langfob almost 8 years ago - 1 comment
Labels: enhancement

#35 - Should scores be calculated for all marxan solutions and rank correlation examined?

Issue - State: open - Opened by langfob almost 8 years ago
Labels: enhancement

#34 - Should num_runs and cur_result_row be removed from gscp_15?

Issue - State: closed - Opened by langfob almost 8 years ago - 1 comment
Labels: question, possible bug

#33 - Problem with results data frame building when cor cost known but sol vec unknown?

Issue - State: open - Opened by langfob almost 8 years ago
Labels: possible bug

#32 - Should node matching to correct solution vector be removed from create_master...()?

Issue - State: open - Opened by langfob almost 8 years ago
Labels: question, possible bug, design note

#31 - Do wrapped problems get correct number of PUs in create_master_output...()?

Issue - State: closed - Opened by langfob almost 8 years ago - 1 comment
Labels: possible bug

#30 - Are the column names on the bipartite metrics coming out correctly?

Issue - State: closed - Opened by langfob almost 8 years ago - 1 comment
Labels: possible bug

#29 - Need yaml option to choose bipartite network metrics

Issue - State: closed - Opened by langfob almost 8 years ago
Labels: coding task

#28 - Need to move marxan output plots into own dir

Issue - State: closed - Opened by langfob almost 8 years ago
Labels: coding task, possible bug

#27 - read_???_marxan_output_files() doesn't know which marxan run # to use

Issue - State: closed - Opened by langfob almost 8 years ago - 1 comment
Labels: bug

#26 - Need problem lookup code & related robustness in dir tree building

Issue - State: open - Opened by langfob almost 8 years ago
Labels: bug, design note

#25 - What to put for wrapped_bdprob@prob_gen_info ?

Issue - State: open - Opened by langfob almost 8 years ago
Labels: question, possible bug

#24 - How to specify slot type as indeterminate in S4 class representation?

Issue - State: closed - Opened by langfob almost 8 years ago - 1 comment
Labels: question, possible bug

#23 - Possible problem with extra nodes in wrapping

Issue - State: open - Opened by langfob almost 8 years ago - 1 comment
Labels: possible bug

#22 - How to lay out directories, especially when combining problems

Issue - State: closed - Opened by langfob almost 8 years ago - 1 comment
Labels: documentation note, documentation task, design note

#21 - Might want separate flags for combined (wrapped) problems and their bases

Issue - State: closed - Opened by langfob almost 8 years ago - 1 comment
Labels: question, possible bug

#20 - Should duplicate links be allowed (in base and/or in wrapped)?

Issue - State: open - Opened by langfob almost 8 years ago - 1 comment
Labels: question, possible bug

#19 - Possible bug in return from bipartite::networklevel()

Issue - State: closed - Opened by langfob almost 8 years ago - 1 comment
Labels: possible bug

#18 - Problem with random seeds and reproducibility

Issue - State: open - Opened by langfob almost 8 years ago
Labels: question, possible bug

#17 - compute_igraph_...(): no visible binding for global variable ‘type’

Issue - State: open - Opened by langfob almost 8 years ago
Labels: possible bug

#16 - Problem? Warning: replacing previous import ‘bipartite::strength’ by ‘igraph::strength’

Issue - State: closed - Opened by langfob almost 8 years ago - 2 comments
Labels: possible bug

#15 - Should save problem features with problem and save them as an open-ended list

Issue - State: open - Opened by langfob almost 8 years ago
Labels: design note

#14 - Need to allow _any_ problem source as reserve selection input

Issue - State: open - Opened by langfob almost 8 years ago
Labels: design note

#13 - !!!!! VERY IMPORTANT: all issues on BDPROBDIFF project !!!!!

Issue - State: open - Opened by langfob almost 8 years ago
Labels: bug, enhancement, question, coding task, documentation note, documentation task, possible bug

#11 - control_params not used in Xu_bd_problem class anymore?

Issue - State: open - Opened by langfob almost 8 years ago
Labels: question, coding task

#10 - Problem related to num_PUs at end of create_master_output_structure

Issue - State: open - Opened by langfob almost 8 years ago
Labels: bug, coding task, possible bug

#9 - Planning unit count problems in master output structure for wrapped problems

Issue - State: open - Opened by langfob almost 8 years ago
Labels: bug, coding task, possible bug

#8 - Confusion over num_ vs. cor_num_, etc.

Issue - State: open - Opened by langfob almost 8 years ago
Labels: possible bug

#6 - read_marxan_output_files() is huge and ugly and needs refactoring

Issue - State: closed - Opened by langfob almost 8 years ago - 1 comment
Labels: coding task

#5 - How to find solution number of marxan's best solution?

Issue - State: open - Opened by langfob almost 8 years ago
Labels: question

#4 - Need get_ functions for num_spp, num_PUs, highest_PU_num, highest_spp_num

Issue - State: open - Opened by langfob almost 8 years ago
Labels: coding task, possible bug

#3 - Move sorting of planning units for marxan input

Issue - State: open - Opened by langfob almost 8 years ago
Labels: enhancement, coding task

#2 - Need to modify write_all_marxan_input_files() to prepend output dir

Issue - State: open - Opened by langfob almost 8 years ago
Labels: enhancement, coding task

#1 - Possible problem with num_PU_spp_pairs written to marxan input files

Issue - State: open - Opened by langfob almost 8 years ago
Labels: possible bug