Ecosyste.ms: Issues

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GitHub / lachlancoin/nptranscript issues and pull requests

#18 - Bump commons-io:commons-io from 2.7 to 2.14.0

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#18 - Bump commons-io:commons-io from 2.7 to 2.14.0

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#17 - Bump com.google.guava:guava from 29.0-jre to 32.0.0-jre

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#17 - Bump com.google.guava:guava from 29.0-jre to 32.0.0-jre

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#16 - Bump htsjdk from 2.21.3 to 3.0.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#15 - Bump htsjdk from 2.18.2 to 3.0.1 in /java

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#14 - An error is reported when running run_example.sh

Issue - State: open - Opened by MaxHuang1999 over 2 years ago

#13 - Bump commons-io from 2.5 to 2.7 in /java

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#12 - Bump commons-io from 2.6 to 2.7

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#11 - download data underlying depth plots

Issue - State: open - Opened by lachlancoin about 4 years ago
Labels: enhancement

#10 - breakpoints in shiny app

Issue - State: open - Opened by lachlancoin over 4 years ago

#9 - Update DESeq_covid_script.R

Pull Request - State: closed - Opened by josiegleeson over 4 years ago

#8 - Bump junit from 3.8.1 to 4.13.1

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#7 - run_consensus is calling consensus amongst all bams

Issue - State: open - Opened by dn-ra over 4 years ago

#6 - Update header for transcripts output file when error caclulation is off

Issue - State: open - Opened by dn-ra over 4 years ago - 2 comments
Labels: bug

#5 - Enable passing of different reference genomes to DE

Issue - State: open - Opened by dn-ra almost 5 years ago
Labels: enhancement

#4 - Full description of output files

Issue - State: open - Opened by dn-ra almost 5 years ago
Labels: documentation

#3 - Bug in R/npTranscript.R

Issue - State: closed - Opened by dn-ra almost 5 years ago - 1 comment
Labels: bug

#2 - unevaluated string name for output in clusters folder

Issue - State: open - Opened by dn-ra almost 5 years ago
Labels: bug

#1 - Ensure bams are sorted upon output

Issue - State: closed - Opened by dn-ra almost 5 years ago