Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / lab-cosmo/chemiscope issues and pull requests

#366 - Add example for using bonds to shapes in various forms.

Pull Request - State: open - Opened by andrewtarzia 11 days ago - 14 comments

#365 - Better error messages and target selection logic

Pull Request - State: closed - Opened by ceriottm 19 days ago - 2 comments

#364 - Web-App fails to start locally

Issue - State: closed - Opened by sachingodishela 23 days ago - 2 comments

#363 - Fixes for using cylinder shapes to represent bonds

Pull Request - State: closed - Opened by Luthaf 28 days ago

#362 - Use of environments in explore

Pull Request - State: closed - Opened by sofiia-chorna 28 days ago

#361 - Allow control over automatic bond assignment

Issue - State: open - Opened by andrewtarzia 30 days ago - 13 comments
Labels: component-structure

#360 - Use GZIP magic bytes to detect whether a file is compressed

Pull Request - State: closed - Opened by Luthaf about 1 month ago

#359 - Obtaining "incorrect header check" in Sphinx

Issue - State: closed - Opened by andrewtarzia about 1 month ago - 11 comments

#358 - Allow passing an MDAnalysis AtomGroup as `frames` paramater

Issue - State: open - Opened by PicoCentauri about 2 months ago
Labels: component-python

#357 - chemiscope.metatensor_featurizer

Pull Request - State: open - Opened by sofiia-chorna about 2 months ago - 2 comments

#355 - Make explore optional

Pull Request - State: closed - Opened by ceriottm 2 months ago

#354 - Logger

Pull Request - State: open - Opened by sofiia-chorna 2 months ago

#353 - Fix exporting and importing of invalid values

Pull Request - State: closed - Opened by sofiia-chorna 2 months ago

#352 - Disable "more options" button in structure options by default

Pull Request - State: closed - Opened by sofiia-chorna 2 months ago - 2 comments

#351 - Add possibility to change the display mode (atom <-> structure)

Pull Request - State: closed - Opened by sofiia-chorna 3 months ago - 16 comments

#350 - Update ase_structures.py to clean warning message

Pull Request - State: closed - Opened by rlaplaza 3 months ago - 4 comments

#349 - One-liner change to fix a cornercase visualization error

Pull Request - State: closed - Opened by ceriottm 3 months ago

#348 - Fix appling map settings x and y properties

Pull Request - State: closed - Opened by sofiia-chorna 3 months ago - 2 comments

#347 - Fix calling a chemiscope widget once

Pull Request - State: closed - Opened by sofiia-chorna 3 months ago

#346 - chemiscope.explore

Pull Request - State: closed - Opened by sofiia-chorna 3 months ago - 6 comments

#345 - Small sphinx fixes

Pull Request - State: closed - Opened by Luthaf 4 months ago

#344 - Fix relative path loading of chemiscope jsons

Pull Request - State: closed - Opened by ceriottm 4 months ago - 1 comment

#343 - Fix the location of CS header files using relative paths

Pull Request - State: closed - Opened by ceriottm 4 months ago - 1 comment

#342 - Fix paths for the chemiscope spinx on the website

Pull Request - State: closed - Opened by sofiia-chorna 4 months ago - 1 comment

#341 - Integration with sphinx-gallery

Pull Request - State: closed - Opened by sofiia-chorna 4 months ago - 3 comments

#340 - Sphinx directive for chemiscope

Pull Request - State: closed - Opened by sofiia-chorna 4 months ago

#339 - The new ASE release breaks all examples

Issue - State: closed - Opened by ceriottm 4 months ago - 1 comment

#338 - Pinning ASE version

Pull Request - State: closed - Opened by ceriottm 4 months ago

#337 - Fix the version of bootstrap to fix the styling of modals

Pull Request - State: closed - Opened by sofiia-chorna 4 months ago - 2 comments

#336 - The styling of the modals in the jupyter widget is broken

Issue - State: closed - Opened by ceriottm 4 months ago - 1 comment

#335 - Use tox for linting and building docs

Pull Request - State: closed - Opened by Luthaf 4 months ago - 3 comments

#334 - Fix of Sphinx Gallery display of Chemiscope Visualizer

Pull Request - State: closed - Opened by sofiia-chorna 5 months ago - 6 comments

#333 - Update dependencies, remove JS unit tests

Pull Request - State: closed - Opened by Luthaf 5 months ago

#332 - GLViewer.replicateUnitCell is no longer a no-op for 1x1x1

Pull Request - State: closed - Opened by Luthaf 5 months ago

#331 - Periodic neighbors of molecules are shown

Issue - State: closed - Opened by PicoCentauri 6 months ago - 4 comments
Labels: component-structure

#330 - Modifying docs to simplify the discussion of basic chemiscope usage

Pull Request - State: closed - Opened by ceriottm 7 months ago - 10 comments

#329 - Small udpates

Pull Request - State: closed - Opened by Luthaf 7 months ago

#328 - Freezing upon settings change

Issue - State: closed - Opened by cbefan 7 months ago - 3 comments

#327 - Fix a bug in atom-centered shape layout

Pull Request - State: closed - Opened by ceriottm 8 months ago - 1 comment

#325 - Fixed a bug in shape coloring, and fixed colorscales

Pull Request - State: closed - Opened by ceriottm 9 months ago

#324 - A few layout tweaks

Pull Request - State: closed - Opened by ceriottm 10 months ago

#323 - Fix axes display when shapes are present

Pull Request - State: closed - Opened by ceriottm 10 months ago

#322 - Atoms color fixes

Pull Request - State: open - Opened by Luthaf 10 months ago - 3 comments

#321 - Added cylinder shape type

Pull Request - State: closed - Opened by ceriottm 10 months ago - 2 comments

#320 - Updating the documentation.

Pull Request - State: closed - Opened by MaximeScope 10 months ago - 1 comment

#319 - A bug with the environment's coloring persists.

Pull Request - State: closed - Opened by MaximeScope 10 months ago - 2 comments

#318 - Added the fix

Pull Request - State: closed - Opened by rosecers 11 months ago

#317 - Updating workflows to reference main branch, not master

Pull Request - State: closed - Opened by rosecers 11 months ago

#316 - Python-side selection

Pull Request - State: closed - Opened by ceriottm 11 months ago - 5 comments

#315 - A few bugfixes and cleanups for the Jupyter widgets

Pull Request - State: closed - Opened by ceriottm 11 months ago - 1 comment

#314 - Density heatmap for large datasets

Issue - State: open - Opened by JPDarby 11 months ago - 5 comments
Labels: component-map

#312 - Added a color bar

Pull Request - State: closed - Opened by MaximeScope 11 months ago - 10 comments

#311 - Fixed a bug in check_shape

Pull Request - State: closed - Opened by ceriottm 11 months ago

#310 - Documentation cleanup

Pull Request - State: closed - Opened by ceriottm 11 months ago - 2 comments

#309 - Load function

Pull Request - State: closed - Opened by bananenpampe 11 months ago - 3 comments

#308 - Broken link to the JSON format docs in the "Load/Save" dialog

Issue - State: closed - Opened by alexpalade 11 months ago - 1 comment
Labels: documentation

#307 - Small cleanup for release 0.6.0

Pull Request - State: closed - Opened by Luthaf 11 months ago

#306 - chemiscope-input had been lost due to removal of setup.cfg

Pull Request - State: closed - Opened by ceriottm 12 months ago - 1 comment

#305 - Refresh the documentation

Pull Request - State: closed - Opened by ceriottm 12 months ago - 2 comments

#303 - Color the 3D structure by a property

Pull Request - State: closed - Opened by MaximeScope 12 months ago - 9 comments

#302 - New examples - files

Pull Request - State: closed - Opened by ceriottm 12 months ago - 2 comments

#301 - Fixed input of arrow parameters

Pull Request - State: closed - Opened by ceriottm 12 months ago

#300 - Issue with the atom labels

Issue - State: open - Opened by MaximeScope 12 months ago - 2 comments
Labels: bug, component-map

#299 - New examples - master

Pull Request - State: closed - Opened by ceriottm 12 months ago - 2 comments

#298 - New examples - files

Pull Request - State: closed - Opened by ceriottm 12 months ago - 2 comments

#297 - Allow input of list of lists in the properties for python bindings

Pull Request - State: closed - Opened by ceriottm 12 months ago

#296 - Passing a list of lists to write_input gives an error.

Issue - State: closed - Opened by ceriottm 12 months ago

#295 - Better documentation needed for write_input(settings = ...)

Issue - State: closed - Opened by rosecers 12 months ago - 1 comment
Labels: documentation, good first issue

#294 - Display a warning when using chemiscope.show inside a sphinx-gallery example

Pull Request - State: closed - Opened by ceriottm about 1 year ago - 2 comments

#293 - Atom property visualisation

Pull Request - State: closed - Opened by angerossi about 1 year ago - 8 comments

#292 - Better input format for shapes

Pull Request - State: closed - Opened by ceriottm about 1 year ago - 8 comments
Labels: enhancement, component-structure, component-python

#291 - Add arrows as predefined shape type on the JS side

Issue - State: closed - Opened by Luthaf about 1 year ago - 1 comment
Labels: component-structure

#290 - Allow displaying multiple shapes simultaneously

Pull Request - State: closed - Opened by ceriottm about 1 year ago - 2 comments

#289 - Utility functions to draw shapes that visualise tensors and vectors

Pull Request - State: closed - Opened by ceriottm about 1 year ago - 4 comments

#288 - Example file with shapes

Issue - State: closed - Opened by Luthaf about 1 year ago - 2 comments
Labels: documentation

#287 - Add example of multi-dimensional property on the website

Issue - State: open - Opened by Luthaf about 1 year ago - 2 comments
Labels: documentation

#286 - Only rebuild the JS code if needed

Pull Request - State: closed - Opened by Luthaf about 1 year ago

#285 - Build wheels and sdist on CI

Pull Request - State: closed - Opened by Luthaf over 1 year ago

#284 - Wrong text color with jupytelab 4 in darkmode

Issue - State: open - Opened by PicoCentauri over 1 year ago - 1 comment
Labels: component-jupyter

#283 - Update to 3Dmol 2.0, now directly compatible with TypeScript

Pull Request - State: closed - Opened by Luthaf over 1 year ago - 3 comments

#282 - Allow visualization of shapes in the structure viewer

Pull Request - State: closed - Opened by rosecers over 1 year ago - 21 comments

#281 - Considering the pyodide_kernel interpreter in the _is_running_in_notebook

Pull Request - State: closed - Opened by agoscinski over 1 year ago - 4 comments

#280 - Fix logscale for color

Pull Request - State: closed - Opened by angerossi over 1 year ago

#279 - Fix eslint

Pull Request - State: closed - Opened by Luthaf over 1 year ago

#278 - Fix for log/inverse/sqrt color scale in map plot

Pull Request - State: closed - Opened by angerossi over 1 year ago - 3 comments

#277 - Use labelalias when using categorical values as color

Issue - State: open - Opened by Luthaf over 1 year ago
Labels: component-map

#276 - Include chemiscope in docs using sphinx

Issue - State: closed - Opened by ceriottm over 1 year ago - 5 comments
Labels: enhancement

#275 - Non-spherical particles in the structure viewer

Issue - State: closed - Opened by rosecers over 1 year ago - 6 comments

#274 - Rename master to main

Issue - State: closed - Opened by rosecers over 1 year ago - 4 comments

#273 - Fix CI job checking google collab

Pull Request - State: closed - Opened by Luthaf over 1 year ago - 3 comments

#272 - Added log/inverse/sqrt scale for color bar in map plot.

Pull Request - State: closed - Opened by angerossi over 1 year ago - 1 comment

#271 - Fixes for rendering on Safari

Pull Request - State: closed - Opened by Luthaf over 1 year ago

#270 - Update dependencies

Pull Request - State: closed - Opened by Luthaf over 1 year ago

#269 - Missing unit cell option in chemiscope jupyterwidget viewer

Issue - State: closed - Opened by agoscinski over 1 year ago - 5 comments

#268 - Integration with streamlit

Issue - State: open - Opened by sandipde over 1 year ago - 1 comment
Labels: enhancement

#267 - Log-scale option in coloring the data points

Issue - State: open - Opened by SanggyuChong over 1 year ago - 11 comments